Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K10
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)               157   6e-39
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   6e-04
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          40   0.001
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                38   0.005
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           38   0.007
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_27904| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score =  157 bits (381), Expect = 6e-39
 Identities = 75/160 (46%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
 Frame = +1

Query: 73  ALYVALACILAVVASDLP--HPLSDAFINLINKKQNTWKAGRNFPTHTPFAHIKILMGAL 246
           A +VALA    ++       +PLS   I+ IN    TWKAG+NF        +K L GA 
Sbjct: 8   ATFVALASAGPILTKSPVDNNPLSMEAIDFINSLHTTWKAGKNFAEVYTIEDVKRLCGAK 67

Query: 247 KDDNILKLPKVTHDAELIANLPENFDPRDKWPECPTLNEIRDQGSCGSCWAFGAVEAMTD 426
           K   +    K+    +   ++P++FD R++WP CPT+ E+RDQG+CGSCWAFGAVEAM+D
Sbjct: 68  KGPPLPLRKKLLISMD---DVPDHFDSREQWPHCPTIKEVRDQGACGSCWAFGAVEAMSD 124

Query: 427 RVCIYSNATKHFHFSAEDLVSCCPICGLGCNGGMPTLAWE 546
           R CI+S      H SAEDL+SCC  CG+GCNGG P  AW+
Sbjct: 125 RYCIHSEGKVMPHISAEDLLSCCETCGMGCNGGYPESAWD 164


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 337 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 513
           W +   +  +++QG CGSCWAF    ++  +   +    K    S ++LV C    G  G
Sbjct: 339 WRKEGYVTPVKNQGQCGSCWAFSTTGSLEGQ--NFKKTGKLVSLSEQNLVDCSTAYGNNG 396

Query: 514 CNGGMPTLAWE 546
           C GG+   A++
Sbjct: 397 CQGGLMDYAFK 407


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 325 PRDKWPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPIC 504
           P   W +   +N ++ QG CGSC+AF    A+     I +        S + +V C    
Sbjct: 501 PHVDWRKAGAVNSVKSQGICGSCYAFAVAGALEGAHFIQTGL--KLDLSEQQIVDCTWGF 558

Query: 505 G-LGCNGGMPTLAWE 546
           G  GC GG P  A +
Sbjct: 559 GNRGCKGGYPYRAMQ 573


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 337 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 513
           W     +  +++QG CGSCWAF    A+  +   +    K    S ++LV C    G  G
Sbjct: 121 WRSKGYVTPVKNQGQCGSCWAFSTTGALEGQ--HFRKTGKLVSLSEQNLVDCSGKYGNNG 178

Query: 514 CNGGMPTLAWE 546
           C GG+   A++
Sbjct: 179 CEGGLMDNAFQ 189


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
 Frame = +1

Query: 145 FINLINKKQNTWKAGRN-FPTHTPFAHIKILMGALKDDNILKLPKVTHDAELIANL-PEN 318
           +I  +N++   +K   N FP  T     K   GAL D++  K     HD  +  ++  E 
Sbjct: 74  YIRSMNRRSLPYKLELNHFPDLTD-DEFKSYKGALDDES--KDVMNDHDDVIDDDVNDET 130

Query: 319 FDPRDKWPECPTLNEIRDQGSCGSCWAF---GAVEA---MTDRVCIYSNAT 453
            +  +  P    +N  + QG+CGSCWAF   GAVEA   + +  C  SN T
Sbjct: 131 QEDEEDEPSDGAVNPAKGQGTCGSCWAFATAGAVEAAHFIQEGFCKTSNLT 181


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 337 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 513
           W +   +  +++QG CGSCWAF    ++  +   +         S ++L+ C    G  G
Sbjct: 49  WSQKGYVTGVKNQGQCGSCWAFSTTGSVEGQ--HFRKTGSLVSLSEQNLIDCSGSYGNNG 106

Query: 514 CNGGM 528
           C GG+
Sbjct: 107 CQGGL 111


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 274 KVTHDAELIANLPENFDPRDK--WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSN 447
           K  H+   +A LP +FD RD        T         CGSCWA G   AM DR+ I   
Sbjct: 40  KRPHEYLNMAKLPTSFDWRDVNGTNYASTTRNQHIPQYCGSCWAHGTTSAMADRINILRK 99

Query: 448 ATKH 459
              H
Sbjct: 100 GKWH 103


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
 Frame = +1

Query: 262 LKLPKVTHDAELIANLPENFDPRDKWPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIY 441
           +KLP V   A +   +P  +   DK      L+    Q  CGSCWAF +  ++  +   +
Sbjct: 306 VKLPDVRALAVVSVTVP-GYLCNDKTEVVLFLHHSALQCQCGSCWAFSSTGSLEGQ--HF 362

Query: 442 SNATKHFHFSAEDLVSCCPICG-LGCNGGMPTLAWE 546
               K    S ++LV C    G  GC GG+   A++
Sbjct: 363 RKTGKLVSLSEQNLVDCSKKYGNNGCEGGLMDYAFK 398


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 355 LNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LGCNGG 525
           ++ +R QG CGSC+A  AV A+     + +   K    SA+ ++ C    G  GC GG
Sbjct: 324 VSPVRGQGICGSCYALAAVGAVEGAYFMKTGKLK--ELSAQQVIDCSWGSGNRGCKGG 379


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 337 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHF-HFSAEDLVSCCPICG-L 510
           W     +  ++DQ  CGSCW+FG    +   + +    TK+    S ++L+ C    G  
Sbjct: 646 WVIRGAVTPVKDQAVCGSCWSFGTTGTIEGTLFL---KTKYLTRLSQQNLMDCSWGEGNN 702

Query: 511 GCNGG 525
            C+GG
Sbjct: 703 ACDGG 707


>SB_27904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +1

Query: 88  LACILAVVASDLPHPLSDAFINLINKKQNTWKAGRNFPTHTPFAHIKILMGALKDDNILK 267
           L  I  V++  LPH L +  I +IN   +TW +  +   H     +  ++  +   ++L 
Sbjct: 4   LLIITTVISGSLPHNLLEVIITIIN---STWSSRFSTQRHHRNHQLNFIITIINSKSLLT 60

Query: 268 LPKVTHDAELI 300
                H  + I
Sbjct: 61  FSTQRHHRKYI 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,880
Number of Sequences: 59808
Number of extensions: 338431
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)