Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K09
(248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 60 4e-11
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 29 0.068
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.12
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 0.27
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 0.63
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 0.84
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 25 1.5
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 24 2.6
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 3.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 3.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 3.4
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 23 4.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 23 4.5
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 23 5.9
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 23 5.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 5.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 5.9
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 23 7.8
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 23 7.8
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 60.1 bits (139), Expect = 4e-11
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +1
Query: 25 FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIR-STIHLTKFRL 201
F RYVE GRV LV+ G GKL +VDI+D RALID P S RQ IR ++ LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 202 KYP 210
K P
Sbjct: 64 KLP 66
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.5 bits (63), Expect = 0.068
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 31 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 117
+ ++PG+VAL++ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.12
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 31 RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 117
+ ++PG+VALV+ G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 0.27
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 171 ANLLPRNTTAGTVNKCACLINDINYANQL 85
+ LLP + T GTV AC I D + A +L
Sbjct: 955 SGLLPTSVTYGTVINAACRIGDESLAEKL 983
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 0.63
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 55 ALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLTKFR 198
+L D P G LVGV +DQ RA++ S + + ++ T+ LT R
Sbjct: 239 SLGEDHPA-GALVGVTKTLDQARAVLTFVES-IVEKSLKGTVSLTAGR 284
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 0.84
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 10 EDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 135
+D F +Y+ G++ L +D P K +G + ++ D
Sbjct: 15 DDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 1.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 149 PLPGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQE 3
P+ G SI + S +P N PSET+ P R K +T Q+
Sbjct: 18 PVWGKSIYGPLRRRFSFSPINVINHSPSETKRRDPVEELRYKPLTPPQD 66
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 2.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 13 DVMPFARYVEPGRVALVSDGPLKGKLVGVVD 105
D + ++PGR+ V DG L ++ VD
Sbjct: 136 DYKNITKVIQPGRIIYVDDGILSFTVIEKVD 166
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 23.8 bits (49), Expect = 3.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GSCEDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRAL-IDG 138
G D +PF ++ G V GPLKGK VV+ T + I+G
Sbjct: 57 GKPADRVPFW-HIFKGDYVYVHQGPLKGKWGRVVETNKYTNGITIEG 102
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 3.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 137 PSISARV*SMISTTPTNFPFRGPSETRATRP 45
PS++ S ++TT TN P PS+ P
Sbjct: 193 PSVAFSSKSTLATTRTNAPLSRPSQPTKASP 223
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 3.4
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 142 GSGVSR-QQIRSTIHLTKFRLKYPFYST 222
G G+S QQI ST H++ ++L P++ T
Sbjct: 676 GIGLSALQQIASTRHISVWQLLSPYWPT 703
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 23.4 bits (48), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 52 VALVSDGPLKGKLVGVV 102
+ + +G L+GKLVG+V
Sbjct: 149 IPITENGKLRGKLVGIV 165
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 49 RVALVSDGPLKGKLVGVVDIIDQTRALID 135
++ + SDG + K +G++DI+ Q L D
Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWD 210
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 23.0 bits (47), Expect = 5.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 136 GPGSGVSRQQIRSTIHLTKFRLKYPFYSTHTC 231
GPG+G+S I+ I + F HTC
Sbjct: 330 GPGTGISIFDIQENIGHCSPEIHNHFPKQHTC 361
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 23.0 bits (47), Expect = 5.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 127 LIDGPGSGVSRQQIRSTIHLTKFRLKY 207
LIDG G S+QQ+ H +L Y
Sbjct: 93 LIDGDGHFSSKQQLIIAFHSLDIQLAY 119
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 129 KCACLINDINYANQLSF*RSIRNQGDSPWF 40
+C CL+N I+ A + + D WF
Sbjct: 162 ECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 23.0 bits (47), Expect = 5.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 129 KCACLINDINYANQLSF*RSIRNQGDSPWF 40
+C CL+N I+ A + + D WF
Sbjct: 162 ECECLLNVIHTAQHMQIVHKLELNEDLLWF 191
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 22.6 bits (46), Expect = 7.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -3
Query: 57 GDSPWFYVTCERHDVLT 7
GD+PW Y C + +++
Sbjct: 109 GDAPWLYAGCYFYRIMS 125
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 43 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 141
PG V ++ G +GK V V+ ++ T ++ GP
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGP 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,994
Number of Sequences: 5004
Number of extensions: 15635
Number of successful extensions: 51
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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