Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K09
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 56 4e-09
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 55 7e-09
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232... 27 1.6
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 1.6
01_06_1138 + 34828690-34828881,34829064-34829143,34829596-348297... 27 1.6
01_05_0703 - 24404580-24406373 27 2.1
05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533... 27 2.8
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096... 26 4.8
01_05_0776 + 25072541-25073080,25073174-25073418,25073558-250739... 26 4.8
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 25 6.4
05_04_0452 - 21373876-21375531 25 8.5
04_01_0273 - 3631903-3632527,3633566-3633742,3633890-3634120,363... 25 8.5
01_06_1077 + 34372486-34372697,34373476-34373547,34373892-343740... 25 8.5
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 56.0 bits (129), Expect = 4e-09
Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Frame = +1
Query: 1 GSCEDVMP-----FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 141
GSC +++P F R+VE GRVALV+ G G+LV +VD++DQ RAL+D P
Sbjct: 3 GSCREILPVVSSPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP 54
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 55.2 bits (127), Expect = 7e-09
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 19 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 141
MPF R+VE GRVALV+ G G+LV +VD++DQ RAL+D P
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP 41
>10_08_0199 +
15721585-15722109,15722135-15722740,15723084-15723273,
15723907-15724175
Length = 529
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 76 LKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIH 183
L ++V V + D+ ++DG G G R+ RST H
Sbjct: 254 LSREMVEVSTVCDRRDVVVDGGGGGGPRKITRSTSH 289
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 43 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 147
P VA +DG L ++G V ID L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193
>01_06_1138 +
34828690-34828881,34829064-34829143,34829596-34829720,
34829808-34829929,34830071-34830301,34830392-34830466,
34830560-34830660,34830779-34830831,34830949-34831143,
34831333-34831454
Length = 431
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 127 LIDGPGSGVSRQQIRSTIHLTKFRL 201
L+DGPG G +R +R+T+ + RL
Sbjct: 324 LVDGPGEGSNRLGVRTTVAIIFARL 348
>01_05_0703 - 24404580-24406373
Length = 597
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 31 RYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLTK 192
R+V RV VS G + +GV + D L+D P SG+ S +H+ K
Sbjct: 164 RHVAGSRVGRVSGGERRRVSIGVDLVHDPAVLLLDEPTSGLDS---GSALHIVK 214
>05_05_0241 -
23551471-23551591,23551755-23551833,23553140-23553334,
23553466-23553518,23553642-23553742,23553844-23553918,
23554033-23554272,23554369-23554490,23554582-23554706,
23554830-23554909,23555064-23555261
Length = 462
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 127 LIDGPGSGVSRQQIRSTIHLTKFRL 201
L+DGPG G R +R+T+ + RL
Sbjct: 329 LVDGPGEGSRRLGVRTTVAIIFARL 353
>02_05_0418 +
28807763-28807777,28809216-28809242,28809588-28809621,
28809909-28810154,28810518-28810948,28812759-28813418
Length = 470
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 49 RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYP 210
R +L D +KGK V + ++ L+ G G VSR +H + + P
Sbjct: 220 RRSLAKDKAIKGKEVYPQNKNEEEEYLLPGSGDAVSRVSTAQILHSSGYTAAEP 273
>01_05_0776 +
25072541-25073080,25073174-25073418,25073558-25073942,
25074058-25074483
Length = 531
Score = 25.8 bits (54), Expect = 4.8
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +1
Query: 19 MPFARYVEPGRVALVSDGPL----KGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIHL 186
+P +P +V V L K KL + ++ DG R+ + HL
Sbjct: 117 IPSVTITDPAQVRDVLSNKLGHFEKPKLPALTKLLADGLTSHDGEKWVKHRRIMNPAFHL 176
Query: 187 TKFRLKYPFYSTHTCCQKSV 246
K +L P +S TCC++ V
Sbjct: 177 EKLKLMLPAFS--TCCEELV 194
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 19 MPFARYVEPGRVALVSDGPLKGKLVGV--VDIIDQTRALIDGPG 144
+PF + ++ +ALVSD + L G D ++ R L G G
Sbjct: 1232 IPFLKAIDISPLALVSDSVVGNGLAGSNRTDALEAVRELFSGDG 1275
>05_04_0452 - 21373876-21375531
Length = 551
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 45 WFYVTCERHDVLTRT 1
W Y C+RH +LT T
Sbjct: 272 WIYAYCKRHGMLTST 286
>04_01_0273 -
3631903-3632527,3633566-3633742,3633890-3634120,
3634431-3634636
Length = 412
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 13 DVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVS 156
DV+P R R SDG +G L+ + D + LI GPG V+
Sbjct: 94 DVIPGQRKSRRAR-GQSSDGDAEGLLLEAHLLFDICKRLIKGPGVAVA 140
>01_06_1077 +
34372486-34372697,34373476-34373547,34373892-34374059,
34374477-34374548,34374628-34374699,34375954-34376023
Length = 221
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 45 WFYVTCERHDVLTR 4
WF+VTC+R + +TR
Sbjct: 57 WFHVTCDRDNRVTR 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,367,575
Number of Sequences: 37544
Number of extensions: 106435
Number of successful extensions: 315
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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