Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K09
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.0  
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   1.8  
SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)                       27   3.1  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    27   3.1  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 26   5.4  
SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)         25   7.1  
SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_42546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 157 RQQIRSTIHLTKFRLKYPFYSTHTCCQKS 243
           RQ+ R    LT  RLK P YS+ +C   S
Sbjct: 17  RQEDRKEPRLTSLRLKLPRYSSRSCVNTS 45


>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 844

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 97  VVDIIDQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYP 210
           +  ++D+T A+     +G+    +R T+ +   R KYP
Sbjct: 640 IFKLLDRTPAIDSASENGLQPAAVRGTVQVRSVRFKYP 677


>SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)
          Length = 462

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 112 DQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYPFYSTH 225
           + TRA IDG        Q+   I   +F++K P   TH
Sbjct: 196 EDTRAAIDGFEGKCQIPQLAGAIKAVRFKIKAPSLVTH 233


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 112 DQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYPFYSTH 225
           + TRA IDG        Q+   I   +F++K P   TH
Sbjct: 180 EDTRAAIDGFEGKCQIPQLAGAIKAVRFKIKAPSLVTH 217


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 245 TLF*QHVWVL*KGYFRRNFVKWIVERICC 159
           T F   ++ + + YFR+ ++K++    CC
Sbjct: 441 TCFNPFIYAISRRYFRQEYIKYLSRIFCC 469


>SB_38159| Best HMM Match : Peptidase_M28 (HMM E-Value=4.7e-09)
          Length = 1049

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 173 ERICCRETPLP 141
           ER+CC  TPLP
Sbjct: 410 ERLCCESTPLP 420


>SB_30082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 TIHLTKFRLKYPFYSTHTCCQKS 243
           TIH TKF++ +   + + CC  S
Sbjct: 46  TIHATKFQMDFGGKAANQCCMAS 68


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 128  SARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTS 12
            S  V S  ST P N PF  PS +R+    S    K ++S
Sbjct: 2915 SIHVPSFHSTQPANAPFTLPSTSRSFNTSSPPSPKPLSS 2953


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,503,134
Number of Sequences: 59808
Number of extensions: 126165
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)