Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K09
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 52 5e-08
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.19
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 26 3.1
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 26 3.1
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 26 4.1
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 26 4.1
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 25 7.1
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 25 7.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 25 7.1
Z77655-5|CAB01132.2| 458|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z30423-11|CAD27184.1| 237|Caenorhabditis elegans Hypothetical p... 25 9.4
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 25 9.4
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 25 9.4
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 25 9.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 52.0 bits (119), Expect = 5e-08
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 19 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQ-QIRSTIHLTKF 195
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R + + LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 196 RLK 204
LK
Sbjct: 61 VLK 63
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.19
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 140 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 39
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 143 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQE 3
PGPS +++ S I TPT P + A +P + G+ +SQ+
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQ 1478
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 143 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQE 3
PGPS +++ S I TPT P + A +P + G+ +SQ+
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQ 1478
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 188 VKWIVERICCRETPLPGPSISARV*SMISTTPTNFPFRGPSET 60
+K+ +ERI P P P+IS S S +PT F P+ T
Sbjct: 3 LKFGIERILSSPYPCPSPTISTPATSPSSISPT---FASPNGT 42
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 188 VKWIVERICCRETPLPGPSISARV*SMISTTPTNFPFRGPSET 60
+K+ +ERI P P P+IS S S +PT F P+ T
Sbjct: 3 LKFGIERILSSPYPCPSPTISTPATSPSSISPT---FASPNGT 42
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -3
Query: 99 YANQL--SF*RSIRNQGDSP 46
Y+NQL +F +SI NQGD+P
Sbjct: 1608 YSNQLGKNFFKSIPNQGDTP 1627
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -3
Query: 99 YANQL--SF*RSIRNQGDSP 46
Y+NQL +F +SI NQGD+P
Sbjct: 1608 YSNQLGKNFFKSIPNQGDTP 1627
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = -3
Query: 99 YANQL--SF*RSIRNQGDSP 46
Y+NQL +F +SI NQGD+P
Sbjct: 238 YSNQLGKNFFKSIPNQGDTP 257
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 152 TPLPGPSISARV*SMIST-TPTNFPFRGPSETRATRPGST*RAKGMTSSQ 6
T P+ +A++ S T T T PS T PG + + GMT+SQ
Sbjct: 386 TTTGNPTTTAQLSSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQ 435
>Z77655-5|CAB01132.2| 458|Caenorhabditis elegans Hypothetical
protein C56A3.6 protein.
Length = 458
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 GKLVGVVDIIDQTRA-LIDGPGSGVSRQQIRSTIHLTKFRLKY 207
G +G +ID RA ++DG SR + + LTK L++
Sbjct: 42 GTSIGAYQLIDTARAGILDG-SDDASRHNVTTDHKLTKRELRF 83
>Z30423-11|CAD27184.1| 237|Caenorhabditis elegans Hypothetical
protein T20G5.13 protein.
Length = 237
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 70 GPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYPFYSTHTCCQ 237
G L ++ GV+ + D+T + + V+ + +++ HL+ RL P + +CC+
Sbjct: 58 GSLTKRIDGVL-VNDETHEQAELAEASVALRPEKTSQHLSVDRLTNPNFIFRSCCE 112
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 203 FRRNFVKWIVERICCRETPLPGPSI 129
F RN V W++ +C + P P P++
Sbjct: 209 FLRN-VTWVIVNLCRCKDPAPSPAV 232
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 203 FRRNFVKWIVERICCRETPLPGPSI 129
F RN V W++ +C + P P P++
Sbjct: 209 FLRN-VTWVIVNLCRCKDPAPSPAV 232
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 203 FRRNFVKWIVERICCRETPLPGPSI 129
F RN V W++ +C + P P P++
Sbjct: 118 FLRN-VTWVIVNLCRCKDPAPSPAV 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,402,328
Number of Sequences: 27780
Number of extensions: 93373
Number of successful extensions: 208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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