Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K09
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   5.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   9.3  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 206 YFRRNFVKWIVERICCRETPLPGP 135
           + R+ F+ W+   +  R TP   P
Sbjct: 349 WVRQVFLNWMPRLLMMRRTPYSTP 372


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 212 KGYFRRNFVKWIVERICCR 156
           KG+FRR+  + I  R C +
Sbjct: 88  KGFFRRSIQQKIQYRPCTK 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 72  SIRNQGDSPWFYVTCERH 19
           ++ N   +PWF    E H
Sbjct: 416 TVENNRRNPWFVEFWEHH 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,428
Number of Sequences: 438
Number of extensions: 1094
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)