Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K09
         (248 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    55   8e-09
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            53   3e-08
At1g26540.1 68414.m03234 agenet domain-containing protein contai...    27   1.3  
At4g17740.2 68417.m02649 C-terminal processing protease, putativ...    27   2.3  
At4g17740.1 68417.m02648 C-terminal processing protease, putativ...    27   2.3  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    26   4.0  
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont...    26   4.0  
At3g43740.1 68416.m04672 leucine-rich repeat family protein cont...    26   4.0  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    25   5.3  
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf...    25   7.0  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    25   7.0  

>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 54.8 bits (126), Expect = 8e-09
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +1

Query: 19  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 141
           M F RYVE GRVALV+ G   GKLV +VD++DQ RAL+D P
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP 41


>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = +1

Query: 19  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGP 141
           M F R+VE GRVALV+ G   GKLV +VD++DQ RAL+D P
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP 41


>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 49  RVALVSDGPLKGKL-VGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLTKFRLKYPFYSTH 225
           RV  V D PL   + +  V   DQ+  ++D   + V   Q +  + +  F    PF+ T+
Sbjct: 461 RVDDVDDQPLSSWINIPTVLSSDQSSNVVDNSAADVEETQAKGALTIEPFTKNLPFWKTY 520


>At4g17740.2 68417.m02649 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 505

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 22  PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGV 153
           PF R++EPG+   +  G  +G + GV   I    A  DGP +G+
Sbjct: 178 PFTRFLEPGKFKSLRSG-TQGAVTGVGLSIGYPTA-SDGPPAGL 219


>At4g17740.1 68417.m02648 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 515

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 22  PFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGV 153
           PF R++EPG+   +  G  +G + GV   I    A  DGP +G+
Sbjct: 188 PFTRFLEPGKFKSLRSG-TQGAVTGVGLSIGYPTA-SDGPPAGL 229


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 19  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRSTI 180
           +P A  +  G     SD P  G    V D+ID+  ++      G  R Q+R T+
Sbjct: 457 LPMASAISSGGSGGGSDSPRSGNRAPVDDVIDKVVSM------GFPRDQVRGTV 504


>At3g43740.2 68416.m04673 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 248

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 45  WFYVTCERHDVLTR 4
           WF+VTC +H  +TR
Sbjct: 61  WFHVTCNQHHQVTR 74


>At3g43740.1 68416.m04672 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 218

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 45  WFYVTCERHDVLTR 4
           WF+VTC +H  +TR
Sbjct: 61  WFHVTCNQHHQVTR 74


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 95  PTNFPFRGPSETRA 54
           PT FP RGPS  RA
Sbjct: 206 PTGFPIRGPSIVRA 219


>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 512

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 127 VRVFDQ*YQLRQPTFLLEVHQK 62
           + VFD  Y  R+PT  ++ HQK
Sbjct: 462 IHVFDIRYNARKPTQSIKAHQK 483


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  VGVVDIIDQTRALIDGPGSGVSRQQIRSTIHLT 189
           +G+  +I+ T   +DGPG+G   Q   S + +T
Sbjct: 170 LGIDIVIEGTGVFVDGPGAGKHIQAGASKVIIT 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,024,482
Number of Sequences: 28952
Number of extensions: 83210
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)