Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K07
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    28   1.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   1.5  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   3.5  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   6.2  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   6.2  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.2  

>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 415 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 534
           FDH K    G     K   ++ HC+   + I G  +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 504 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILGDFCVISTDNFINNGVF 328
           Q C S    SS+ +L  ++   A Q+H  + +  D ++  +  D  V S ++F+NN  F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 359 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 183
           P  I   T S +P ++   +SG  +T+        +S      GGP +T + SGP+  D
Sbjct: 135 PAPINSATASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 4   LGDSQCGYENNIPMVCCPISNACKTPDDKPGI 99
           L  S   Y  ++P++C  ++  C TP D  G+
Sbjct: 171 LNSSSSHYSKDVPLLCGSLTIDCPTPIDLRGM 202


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 73  KTPDDKPGICVGLYNCEHITYMMLDKTRKSKMDYVRQSVCNGPE 204
           +T D KP + V  Y C+   Y +  + R+    ++  S C   E
Sbjct: 190 RTSDVKPSLTVNAYTCDRCGYEVFQEIRQK--TFLPMSECPSDE 231


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = -3

Query: 458 ELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQH 315
           E +S+   S  +  K+     T+HG W   ++ P ++ ++ ++  P++
Sbjct: 469 EKLSQWYKSDTLLGKIDKEADTNHGTWNFLLNLPLSLTISHITPLPEN 516


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 181 VERNPFYSFWSYLASYK*YAHSCTNRHK 98
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
 Frame = +1

Query: 232 PEINPEDMTLNERCSRAV-TAFPLESNNECCGVEDTVVNKIVGG--NDTKITQYPWLVVI 402
           P +NP D+TL ER    + + F  ES  E   V+  +V  ++    ++  I ++ +L+  
Sbjct: 211 PTLNPSDITLMERVVNTIASCFCGESTPE--RVQLQIVKALLAAITSERTIIRHSFLLTA 268

Query: 403 EYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMKGT 582
             +++ ++ LLC  S   +   +     V        T  N    E++T N       GT
Sbjct: 269 VRQTY-NIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLN-HEREFSTINMNKSSSNGT 326

Query: 583 KD 588
            D
Sbjct: 327 PD 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,129
Number of Sequences: 5004
Number of extensions: 55134
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)