Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K07
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38320.1 68415.m04708 expressed protein                             29   2.3  
At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote...    29   2.3  
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote...    29   3.0  
At4g33380.1 68417.m04745 expressed protein                             27   7.0  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    27   9.3  
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put...    27   9.3  

>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 139 MLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESN 309
           +L++ R  +M YV  S+  G     VC       NP+ M ++   S  +T   LE N
Sbjct: 120 LLERLRNKRMVYVGDSLNRGQWVSMVCMVSSVITNPKAMYMHNNGSNLITFKALEYN 176


>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 373 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 477
           I  YP  +VIE E  DHM + C   L+S   +  A
Sbjct: 225 IHNYPANLVIEMEETDHMPMFCKPQLLSDHLLAIA 259


>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 373 ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 477
           I  YP  +VIE E  DH+ L C   L+S   +  A
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLSDHLLAIA 268


>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 429 AAMRW-LTHQFEVRAHCCTLC 488
           AA+RW LTH  E  A CC  C
Sbjct: 229 AAVRWGLTHHKESAADCCQAC 249


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 521 FGVPSIKIAPVTQCAAVSTYFELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPP 354
           +GVP+   +P T  +  S  ++   E  H S+  S +SY   T++G +   V+ PP
Sbjct: 460 YGVPAYTTSPPTIYSNRSPPYQYSPEAVHGSYQTSPVSY--PTAYGTYCSPVAAPP 513


>At3g16620.1 68416.m02124 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1089

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 193 NGPETFSVCCGPPPEINPEDMTLNERCSRAVTAFPLESNNECCGVEDTVVNK 348
           N  E F    G    + PE +    +       FPL SN+E C +E+T  N+
Sbjct: 36  NEEEVFEEAIGSQEGLKPESL----KTDVLQEDFPLASNDEVCDLEETSRNE 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,299
Number of Sequences: 28952
Number of extensions: 291355
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)