Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K06
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    31   0.63 
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    30   1.1  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   4.4  

>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 471 MKRVMNSFVLFKNMLPSYTREELDFPGVKVE 563
           ++ V+N  + FKN+LP+++   LD+ GV ++
Sbjct: 558 LRTVVNEVINFKNLLPAFSANLLDYGGVFIQ 588


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 54  RQERLLASHLHWAG---GS*ANGDEMPVRQNNFVPVTSENLK 170
           ++ + +  H HW G   G   N   +  R+NNF+PV   NL+
Sbjct: 501 KENKKVMDHDHWTGEFRGPLCNSCNLLKRRNNFIPVFFHNLR 542


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -1

Query: 204 SSAQHHLEAFSV*DSRS*PEQNYFDELASHLHWPKIRLPNGDEMPITVLDGFTSCRIPAA 25
           +S +HH+    + D+     +N   + ++ L WP++   N    P+T L  FT   +  A
Sbjct: 708 NSGKHHINTTIILDTDK--AKNIKIKTSAELVWPRLLTRNSIHFPLTALGNFTIVNLTLA 765

Query: 24  QGDPTS 7
             +PT+
Sbjct: 766 --NPTN 769


>Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical
           protein C15A11.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 485 HDAFHYLPEYW 453
           HD FHY PEYW
Sbjct: 75  HDFFHYYPEYW 85


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 126 VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 248
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,459,372
Number of Sequences: 27780
Number of extensions: 309060
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)