Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K05
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 28 1.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 1.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 1.7
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 26 3.9
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 26 5.1
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 26 5.1
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 6.8
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 9.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.0
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 569 FYELDWFTHKITPGQNKIVRNSNE--FSLFKEDSLPLTDLMKLLD 441
F LDWFT+ + QN+++R S + F + L L +KLL+
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -2
Query: 355 IHSSSLFSYIRLNLV--AMI*HHLRPLLLITSLLAIHSTVQRTRRASKSLICSL 200
+ S+L RLN+ A + +LR ++L T + +ST+ RT+ + L+C L
Sbjct: 579 VRESALRIIGRLNVYNPAYVMPYLRKIMLKTLTILDYSTIIRTKEENAKLLCLL 632
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 167 FPYKFNVPPYFSKTNDVPK 111
FPY + PPY S T+++P+
Sbjct: 730 FPYNTSYPPYMSPTSNMPQ 748
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 271 TSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLT 158
+S L +H T+ A KS++C SYT+ +T LT
Sbjct: 22 SSTLEVHVTILHVNLA-KSMLCGFIHVSYTSPNNTSLT 58
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 427 GTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGV 537
G FPS + + GK + +KS F+L+ +L C GV
Sbjct: 131 GKFPSPVSHADDLYGKITEVKSTIKFQLKKVL-CLGV 166
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 388 LFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFE 507
LFG +KP+ GT +SNN +G + +EN E
Sbjct: 160 LFGGGNKPAAAVTGTSSNSNNASAKSDGPTITELNENETE 199
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 195 ILKEHIRLFEARRVRWTVEWIAKRLVINNKGLKWCQ-IMATRFKRIYE 335
+LK H LFE+ V+++ + V KGL + ++ T F YE
Sbjct: 343 LLKIHFLLFESFTAESVVDYVRRCFVAFEKGLSLSKGLLPTDFTHGYE 390
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 189 EDILKEHIRLFEARRVRWTV 248
E+ILK H +LF RW++
Sbjct: 362 ENILKHHDQLFSVEITRWSI 381
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 108 LFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINN 281
L + GFR V+F+RK+++ +D H RLF + W + + ++L N
Sbjct: 126 LTKTFEGFRNQLDKVQFIRKLMSKANVDDF---HTRLF----ILWMLPYSLRKLKERN 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,336
Number of Sequences: 5004
Number of extensions: 55882
Number of successful extensions: 200
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -