Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_K05
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0651 - 23164377-23165969 30 1.3
09_06_0289 - 22053561-22055666,22055745-22055771 29 3.0
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 3.0
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 28 5.3
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 5.3
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 5.3
11_06_0715 + 26552962-26553510,26553578-26555746 27 9.2
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 9.2
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 27 9.2
01_04_0140 + 16572497-16572528,16572958-16573063,16573509-165735... 27 9.2
>06_03_0651 - 23164377-23165969
Length = 530
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +3
Query: 117 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINNKGLKW 296
N+ GF N+ +L D L+E ++LFE R + W ++++ GL
Sbjct: 178 NVFGF-----NLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISW---TILVSGYGLAG 229
Query: 297 CQIMATR--FKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQ 425
Q+ R F + E + W + + QH A FR +Q
Sbjct: 230 -QLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQ 273
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 234 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 326
VRW EW + LV+ + GL+W ++A ++
Sbjct: 40 VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 385 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 561
NLF + SD YN SSN M V GKE S +S T+ F G + N ++
Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565
Query: 562 S*KFMPVFFXCDGEIHYRC 618
S F +G I C
Sbjct: 566 SSSKPDQLFWINGYICSIC 584
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 286 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 423
+S+ SW L + K KNW NG ++ +G FG S P DI+
Sbjct: 35 SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 497 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 396
F+ FKE+ PLT + L G P + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 286 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 432
++NG R+WL+D N T K +W+ P +I+++ +H + ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 600 PITXEENWHKFLRTGLVHAQDNSWAKQDCTQLKRIFAFQRGL 475
P++ +E+W F RT +DN + T K+I + +G+
Sbjct: 315 PLSEQESWELFCRTAFPRDKDNECPAELMTLAKQIVSKCQGI 356
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 117 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 209
N++G + RG+V + V++ V YE + EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 560 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKL 447
+D F +T KI RNS +FS DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315
>01_04_0140 +
16572497-16572528,16572958-16573063,16573509-16573567,
16573615-16573681,16573964-16573989,16574787-16574913,
16576542-16576609,16577223-16577329,16577837-16577902,
16579332-16579438
Length = 254
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 588 EENWHKFLRTGLVHAQDNSWAKQDCTQLKRIFAFQ 484
EEN K+LR LV + SW+ + + +FQ
Sbjct: 94 EENLRKYLRPCLVSQESRSWSHANMHHANVVLSFQ 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,052
Number of Sequences: 37544
Number of extensions: 318822
Number of successful extensions: 783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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