Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K05
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             31   0.58 
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)             29   3.1  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   3.1  
SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)                   28   5.4  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   7.1  
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 28   7.1  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 310 LLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSS--NNFMRSVNGKE 477
           ++DS G     N+ G+   VP G++ L+G H+     +   FP S  N+F+  V G+E
Sbjct: 439 IVDSFGTEAQFNYAGFTEKVPGGSMALWGRHNLNLKQFMTMFPHSPDNSFLGFVVGEE 496


>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +3

Query: 114 RNIIGFRKV-RGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKR-----LVI 275
           R IIG R + RGN   VR + A    + +  EH+ L     VR   E I K+     +++
Sbjct: 63  RVIIGARNLDRGNAA-VRDIQASSGSQQVFVEHLDLASLSSVRKFAEVINKKEERVDILM 121

Query: 276 NNKGLKWCQIMAT 314
           NN G+ W     T
Sbjct: 122 NNAGVAWIPFKRT 134


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 262 LAIHSTVQRTRRASKSLICSLRMSSYTTKASTFLTNS 152
           LA+  +  RTRRA+KSL   L+  S + + S  LT S
Sbjct: 443 LAVKQSSPRTRRANKSLQAPLKPPSSSPRPSKALTGS 479


>SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)
          Length = 159

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = +1

Query: 289 SNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVN 468
           S G   +  +S GY K  NW  +P   P  +       ++P+ +YN   P + N   +V 
Sbjct: 69  SGGTVKYKNESTGYIKAYNWT-FPGGTPSTS-----TLAEPTVVYN--TPGTYNVQLTVT 120

Query: 469 GKESSLKSENSFELRTILFCPGVILC 546
           GK ++  +       TI   P +  C
Sbjct: 121 GKNNNTNNATKNNYITIHQKPNLNYC 146


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 234 VRWTVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTF 365
           ++W   +I  R ++ N  +KW +     ++ I  N  +EW+  F
Sbjct: 49  IKWLRCFIVWRGIVTNSAIKWLRCFIV-WRGIVTNSAIEWLRCF 91


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +3

Query: 102 LLLFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAK- 263
           LLLF   + FR V GN+ F +       Y D++    R+     F  +   W  + ++K 
Sbjct: 388 LLLFMRNLTFRGVTGNIRFEKSGNPTNAYYDVMNFRKRVPGGKYFIEKVGFWKRDQVSKP 447

Query: 264 RLVINNKGLKW 296
           +L +N K ++W
Sbjct: 448 QLQVNGKLIQW 458


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 226 ASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPM 122
           A K LIC+L  S++  + S      T PL++L PM
Sbjct: 96  AFKVLICTLLFSAFRLERSPSTPPITAPLSYLPPM 130


>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 265 LLAIHSTVQRTRRASKSLICSLRMSSYT---TKASTFLTNSTFP 143
           L A H+T+ RTR  S+S  CSLR + +    TK+    T+ T P
Sbjct: 232 LYARHNTLTRTRAPSRS--CSLRTAQHPHTGTKSPMLSTHGTTP 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,505,936
Number of Sequences: 59808
Number of extensions: 382460
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)