Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K05
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    37   0.010
At3g17530.1 68416.m02239 F-box family protein contains Pfam prof...    29   1.9  
At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr...    29   2.5  
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot...    29   2.5  
At3g13680.1 68416.m01727 F-box family protein contains F-box dom...    29   3.3  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   4.4  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   4.4  
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    28   4.4  
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont...    28   5.8  
At1g29355.1 68414.m03589 expressed protein                             27   7.7  

>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
 Frame = +1

Query: 271 LSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLG-NINLFGMHSKPSDIYNGTFPSSN 447
           +S+ +     + W    N    +K      P   LG  +  F ++S  S+++     ++ 
Sbjct: 21  ISLKRLRYTCKQWNALFNDQRFSKKHRDKAPKTYLGLTLKDFRIYSMSSNLHGLLHNNNI 80

Query: 448 NFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQSSS*KFMPVFFXCDGEIHY 612
           + +    GK SSL   N FE+  I  C G+ILC  + ++   + V+  C G+  +
Sbjct: 81  DLLMEFKGKLSSLNDLNDFEISQIYPCDGLILCSTKRNT--RLVVWNPCTGQTRW 133


>At3g17530.1 68416.m02239 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 388

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 463 VNGKESSLKSENSFELRTILFCPGVILCVNQSSS*KFMPVFFXCDGEIHYRC 618
           V GK   L      ++  I  C G+ILC    S+   + V+  C GEI  RC
Sbjct: 83  VTGKLIKLNDSKGVDISAIFHCDGLILCTTTEST--GLVVWNPCTGEI--RC 130


>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 369

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = +3

Query: 252 WIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQR 428
           W     V N     WC I   R+  IY NK   W+ T S  W+          FR   R
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWRKIKGLDFLNKFRETDR 300


>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II precursor
           (Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
           vulgare]
          Length = 442

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 168 VLAFVVYEDILKEHIRL-----FEARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKRIY 332
           +L  V Y  I+++ +RL       A R R   EW      +N  G+     M    KRI 
Sbjct: 277 ILLDVCYPSIVQQELRLKKMNALHANRTRLPYEWTMCSNRLNYSGIDGYIDMLPSLKRII 336

Query: 333 ENKELEWI 356
           +N+   WI
Sbjct: 337 QNQTPVWI 344


>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 395

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 274 ITSLLAIHSTVQRTRRASKSLICSLRMSSYTTKASTFL 161
           +TSL AI ST Q+    SKS IC  + ++   K   F+
Sbjct: 21  LTSLRAIRSTCQKWNSLSKSQICGRKATAAENKFLGFM 58


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 319 SNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFP 438
           SN Y    +++G  PS  +GNI+L    + PS  +NG  P
Sbjct: 189 SNLYMGLNSFSGQIPS-EIGNISLLKNFAAPSCFFNGPLP 227


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 117 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 218
           N++ F    G  EFV +++  V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 349 NGYPPSVPLGNINLFGMHSKP--SDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTI 519
           N Y   VP+   NL  + +     ++  G FP     ++S+NG ES   S N F L+TI
Sbjct: 710 NKYSGVVPMSFTNLINITNLDLSHNLLTGPFP----VLKSINGIESLDLSYNKFHLKTI 764


>At5g01160.1 68418.m00020 e-cadherin binding protein-related
           contains weak similarity to E-cadherin binding protein
           E7 [Mus musculus GP|9622093|gb|AAF89617
          Length = 360

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 322 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 414
           +G ++  +  GYPP  P+ N+N  G +  PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324


>At1g29355.1 68414.m03589 expressed protein
          Length = 307

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 265 GLLSITKASNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSD-IYNGTFPS 441
           GL  ++ +   V   L+ S    K K+W          +     + ++ S+ I+ G  PS
Sbjct: 213 GLSHVSDSQLTVSDPLISSLRLDKEKSWYDQTVEEEENHAQEAPLEARFSNAIHIGELPS 272

Query: 442 SNNFMRSVNGKESSLKSENSFE 507
           +N     +N  E  +KSE ++E
Sbjct: 273 ANPENTEINASEMEIKSEETWE 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,175,142
Number of Sequences: 28952
Number of extensions: 282801
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)