Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_K04
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             218   3e-57
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   4.7  
SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)                    28   6.2  
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)               27   8.2  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  218 bits (532), Expect = 3e-57
 Identities = 97/140 (69%), Positives = 118/140 (84%)
 Frame = +3

Query: 18  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 197
           LKE++VIGR +P++    PPLYKMRIF+PD +VA+S+FWYF+ QLK+ KK+ GEIVS ++
Sbjct: 207 LKEFQVIGRLMPNKKLTVPPLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQ 266

Query: 198 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 377
           I EK P++IKNFGIWLRY+SRSG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI
Sbjct: 267 IYEKKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQI 326

Query: 378 IKVEVIKAAACRRPQVKQFH 437
           +KVEVI A+  RRP VKQ H
Sbjct: 327 MKVEVIPASKARRPHVKQMH 346


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 212 TLFWNFLDGYNFTSSL 165
           T+FW+FLDG N T  L
Sbjct: 603 TMFWDFLDGNNLTQEL 618


>SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)
          Length = 397

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 554 VIIPYIKLHEVRARPLVCKGXETLVLVNAFW 462
           +I  YI+  +VR   L+C+G + ++  + FW
Sbjct: 165 MIAKYIQPEDVRTFSLICRGTQMVINSSNFW 195


>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 27  YEVIGRKLPSESEPKPPLYKM 89
           Y+V+  + PS + PK P+YKM
Sbjct: 498 YDVMTERQPSMTTPKEPIYKM 518


>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
          Length = 413

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 241 QIPKFLILTGLFSGISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRG 74
           Q PK+ I   +F+ I ++      + +  F CL +Y+ + +A   S    L++ RG
Sbjct: 290 QTPKYFIFNVIFAIIFVITATFLTILVTIFLCL-RYKPKSYAVDSSKGSPLLVPRG 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,670
Number of Sequences: 59808
Number of extensions: 349755
Number of successful extensions: 1158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)