Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J24
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 33 0.11
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 29 1.9
05_03_0625 - 16325827-16326495 29 2.5
01_07_0045 - 40706873-40706956,40707083-40707253,40707585-407078... 29 2.5
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 29 2.5
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 4.3
10_08_0650 - 19591898-19593148 28 5.7
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 28 5.7
03_05_0267 - 22538631-22539452 28 5.7
02_01_0333 + 2370032-2371075 27 7.5
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 27 10.0
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 27 10.0
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 27 10.0
07_03_0862 + 22075395-22075714,22075716-22076307 27 10.0
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 27 10.0
04_04_0267 + 24048649-24049140,24049521-24049835 27 10.0
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 27 10.0
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 27 10.0
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 173 DPTITKVLPTSYMRGPPESPLHASSPGLPPAHS-CSLVITSASPP 42
D T+ L T PP+SP A+ P LP A CS + + +PP
Sbjct: 307 DMTVIDTLSTHSAAPPPDSPSTAAPPSLPSAACWCSPAVQTTAPP 351
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 128 PPESPLHASSPGLPPAHSCSLVITSASPP 42
PP P+ S P LPP S S V +S+SPP
Sbjct: 58 PP--PVAGSKPQLPPFSSSSSVASSSSPP 84
>05_03_0625 - 16325827-16326495
Length = 222
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 176 TDPTITKVLPTSYMRGPPESPL--HASSPGLPPAHSCSLVITSASPP 42
T P++ P ++ PP +P A SP PP H L I A PP
Sbjct: 7 TPPSLLLPSPPFFLPPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPP 53
>01_07_0045 -
40706873-40706956,40707083-40707253,40707585-40707812,
40708414-40708423,40709108-40709553
Length = 312
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 10 DRCQAAQRTLRGGEALVITKEQLCAGGKPGEDACRGDSGG 129
+RC+A +R GGE + E A K E A G GG
Sbjct: 16 ERCEARRRARSGGEVAMDEAEAAAAAAKMDELAGGGGGGG 55
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = -3
Query: 255 YPWYVLVNVRIYAGDVP-------CAAIFRSVTDRSNHYESVTHFI 139
+PW ++R++ GD P CA FR V+D S H H +
Sbjct: 1152 WPWARTEHLRVHTGDRPYVCHEPGCAQTFRFVSDFSRHKRKTGHSV 1197
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 164 ITKVLPTSYMRGPPESPLHASSPGLPPAHS 75
+ ++ T +RG P +P+ SSP L P +S
Sbjct: 999 LARMKHTGMLRGGPSTPMLVSSPSLNPVYS 1028
>10_08_0650 - 19591898-19593148
Length = 416
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 175 QIQPLRKCYPLHT*GVHRSRPCTRLHRVY 89
Q+ P R C+PL G HR R RVY
Sbjct: 289 QVVPRRSCFPLLAGGRHRRRRLRFTSRVY 317
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 130 PLMYEVGNTFVMVGSVSYGPKYCGT--RNIPGVYTNVY 237
P Y + N V V + YGP CG+ +P N+Y
Sbjct: 242 PFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNIY 279
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 42
P+S P SP S P P+ CS + SPP
Sbjct: 185 PSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSPP 220
>02_01_0333 + 2370032-2371075
Length = 347
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 37 LRGGEALVITKEQLCAGG--KPGEDACRGDSGGPLMYEVGNTFVMVGSVSYGPKYCGTRN 210
L G +V+ +Q C PGE A R P E+ V VG Y + N
Sbjct: 79 LGGNHNMVVAADQTCRTVLYDPGEHAVRTLPALPYQLELPTASVTVGDDLYILDHVEVGN 138
Query: 211 IPGVYTNVYE 240
+P + +YE
Sbjct: 139 VPCFHGLIYE 148
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 158 KVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPPRNVLCA 24
K++P+ RG +HA P+ + L S SP R ++CA
Sbjct: 567 KIMPSELKRGKMRL-IHALQDMNDPSDNIQLKGNSTSPSREIICA 610
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 172 SVSYGPKYCGTRNIPGV-YTNVYEYIPWI 255
+V P +CG RN P + + NV E WI
Sbjct: 1137 TVEGSPNFCGLRNFPSLTHVNVTESGEWI 1165
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 261 TSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 121
T Y WY + R+ D+P + V + S+H ++ F+++ G
Sbjct: 512 TDYLWYT-TSFRLETDDLPYRKEVKPVLEVSSHGHAIVAFVNDAFVG 557
>07_03_0862 + 22075395-22075714,22075716-22076307
Length = 303
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 204 CAAIFRSVT-DRSNHYESVTHF--IHEGSTGVAPARVFTGFTTRTQL 73
C +F ++ +R H ++ E GV R GFTTRTQL
Sbjct: 153 CEMVFFTIDLERDEHMSNIAILEEAEEDMVGVFSLRTDLGFTTRTQL 199
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 88 GKPGEDACRGDSGGPLMYEVGNTFVMVGSVSYGPKYCGTRNIPGVYTNVYEYIPW 252
G P + C PL +GN F+ GS G G++ P + PW
Sbjct: 615 GPPMQGTCAPRPHVPLGVSIGNEFIPGGSTGVGSSAQGSQTTPTSDCHGKRRKPW 669
>04_04_0267 + 24048649-24049140,24049521-24049835
Length = 268
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 206 LVPQYFG--P*LTDPTITKVLPTSYMRGPPESPLHA 105
LV QYF T+P + + LP+ G P SPL A
Sbjct: 207 LVTQYFQCVDGFTEPEVVRKLPSDAAGGKPASPLDA 242
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 191 FGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPPRNVL 30
FGP L+D +T L +S M P H +PP + + +SPP L
Sbjct: 453 FGPSLSDLHLTH-LQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARAL 505
>01_06_1699 -
39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 539 CIFVCVAQVARRPLKPSTRLRYTPCTIGKDAPD 441
C F+C+ V RP K + + + P + +D+ D
Sbjct: 100 CTFICLVAVTMRPSKANQQDQNQPLLVREDSDD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,250
Number of Sequences: 37544
Number of extensions: 324859
Number of successful extensions: 1110
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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