Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J24
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 0.51
At2g33780.1 68415.m04143 VQ motif-containing protein contains PF... 29 2.7
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 2.7
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 3.6
At3g09780.1 68416.m01161 protein kinase family protein contains ... 28 4.8
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 27 6.3
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 27 6.3
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 27 8.3
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 27 8.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 8.3
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 27 8.3
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAHSC 72
P + PP SP+H SSP PP+ C
Sbjct: 675 PEVHYHSPPPSPVHYSSPPPPPSAPC 700
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAH 78
P Y PP P+H SSP P H
Sbjct: 655 PVYYSSPPPPPPVHYSSPPPPEVH 678
>At2g33780.1 68415.m04143 VQ motif-containing protein contains
PF05678: VQ motif
Length = 204
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 176 TDPTITKVLPTSYMRGPPESPLHASSPGLPPAHS 75
TDP+ K + + G P++P H P PP HS
Sbjct: 41 TDPSSFKQV-VQLLTGIPKNPTHQPDPRFPPFHS 73
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 170 PTITKVLPTSYMRGP--PESPLHASSPGLPPAHSCSLVITSASPP 42
P T P S + P P +P A +P PPA + VI+ A+PP
Sbjct: 53 PPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPP 97
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 42
P + PP P+++ P PP HS + S PP
Sbjct: 543 PPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPP 578
>At3g09780.1 68416.m01161 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 775
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 289 CSHYFRLLLYFLSMVCTRKRSYIRRGCSLCRNIS 188
CSH F FLS CT I CSLC+N S
Sbjct: 388 CSHGF-----FLSSSCTANSDRICTPCSLCQNSS 416
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -1
Query: 218 PGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCS 69
P L P + P + P + PP +H SSP PP H S
Sbjct: 416 PSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSS 465
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 529 YVSLRSLGVP*NLPPVCATHP 467
YVSL L VP N PP C P
Sbjct: 46 YVSLPPLSVPGNAPPFCINPP 66
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAHSCSL 66
P + + PP SP+H+ +PG+ P S+
Sbjct: 431 PFANLGMPPPSPIHSLTPGMSPIPGTSV 458
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 149 PTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 42
P Y + PP S +++S P PP +S S + SPP
Sbjct: 491 PKVYYKSPPPSYVYSSPP--PPYYSPSPKVYYKSPP 524
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Frame = -1
Query: 200 PQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGL----PPAHSCSLVITSASPP 42
P + P P + P PP P+H+ P + PP HS + S PP
Sbjct: 513 PPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPP 569
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 225 IYAGDVPCAAIFRSVTDRSNHYESVTHFIHE-GSTGVAPARVFTGFTTRTQLLLS 64
+Y G C + DR +E+++ + + GS+G+APA + + + +LLS
Sbjct: 494 VYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLS 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,302
Number of Sequences: 28952
Number of extensions: 247097
Number of successful extensions: 838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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