Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J21
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    31   0.11 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   5.3  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   7.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   7.0  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   7.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.2  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 128 RRSMGFSAYCDGVPDGKAFGCTPYRSTVPPTR 33
           R S  F A  D   DGK FG +  +S +PPTR
Sbjct: 315 RNSFVFQAQNDMQDDGKGFGISNLKSFLPPTR 346


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 234 IVSRHRRQRIQGDYTFNLL**EGHRCQSPDRSSDGASC 347
           ++S++  +R++ DY  NL+   GH   S + SS    C
Sbjct: 81  VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLC 118


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 163 LSSELRELDNMLADFYRKF 219
           L S+L EL ++L  FY+KF
Sbjct: 421 LESQLVELQSLLTQFYQKF 439


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 160 ELSSELRELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEK 300
           E  S+  EL++   D +RK  T   SSQ  +  E K+  P+ +F  K
Sbjct: 62  EGDSKSSELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPI-AFQHK 107


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 116 PYFGEDVFDTVGSG 157
           P FG+D++DT+G G
Sbjct: 437 PLFGQDMYDTLGYG 450


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 160 ELSSELRELDNMLADFYRKFPT 225
           EL +EL   DN+LA   R+F T
Sbjct: 590 ELKAELNLRDNLLASMQREFET 611


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  LAAAVSAAPYYGMGYNQMPFHPEHHH 100
           ++ A ++AP+   GY     HPE+H+
Sbjct: 194 MSFANTSAPFSTKGYKMKYKHPEYHY 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,040
Number of Sequences: 5004
Number of extensions: 44854
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)