Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J21
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t... 29 1.9
At2g25190.1 68415.m03012 expressed protein 29 1.9
At1g05860.1 68414.m00613 expressed protein 29 1.9
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.6
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.6
At4g31230.1 68417.m04433 protein kinase family protein contains ... 27 5.9
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 27 5.9
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 27 5.9
At4g25850.1 68417.m03718 oxysterol-binding family protein contai... 27 7.8
At4g04340.3 68417.m00621 early-responsive to dehydration protein... 27 7.8
At4g04340.2 68417.m00620 early-responsive to dehydration protein... 27 7.8
At4g04340.1 68417.m00619 early-responsive to dehydration protein... 27 7.8
>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
mitochondrial precursor (Hepatoredoxin) from Homo
sapiens, SP|P29330 Adrenodoxin from Ovis aries; contains
Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding
domains; identical to cDNA GI: 28192430
Length = 197
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 232 SSSQGIEGNEYKVTIPLTSFDEKDIVVKARTGLLMVQAVHKYEGDVQ 372
SS G E E K+TI D ++I VK G+ +++A H+ + D++
Sbjct: 70 SSENGDEETE-KITIIFVDKDGEEIPVKVPIGMSVLEAAHENDIDLE 115
>At2g25190.1 68415.m03012 expressed protein
Length = 240
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Frame = -1
Query: 511 GQLHESSRP*LRQVSLEKRFLVRPDCKS---NFRSHLRSPAMS*HPNNSSV--------H 365
G+L ES + LR S L S N RSH+R+ + HP++SS
Sbjct: 165 GELSESEKKKLRNRSRSDPLLSSSPSSSTPDNHRSHIRAKSSGNHPSSSSSSSSGSKKNR 224
Query: 364 RPRTYEQLAPS 332
RP+ +Q +PS
Sbjct: 225 RPKAQDQKSPS 235
>At1g05860.1 68414.m00613 expressed protein
Length = 280
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 50 YYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTVGSGPN 163
YY Y PF E++H R G+ + GSG N
Sbjct: 103 YYSWNYGVSPFKDENYHQNKRRKVEGQTGDEIEGSGDN 140
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 121
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 PYYGMGYNQMPFHPE-HHHNRLRSPYF 124
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 121
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 PYYGMGYNQMPFHPE-HHHNRLRSPYF 124
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At4g31230.1 68417.m04433 protein kinase family protein contains
Pfam profiles PF00069: Protein kinase domain, PF00582:
universal stress protein family
Length = 764
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 204 VGEHVVQLA*LAGEFGPEPTVSKTSSPK 121
+ E Q A + GP PT S+TSSPK
Sbjct: 736 LAEESTQAAVVINSSGPTPTESQTSSPK 763
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 463 EKRFL--VRPDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 320
E+ FL + P S+++ L S +S H N + HRP +PS + S
Sbjct: 190 EESFLSDLDPSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSSNPS 239
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 154 WSELSSELR-ELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKD 303
WS+++S L DN + + + +GI+ N +K + SF +KD
Sbjct: 89 WSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKD 139
>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 383
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 92 VPDGKAFGCTPYRSTVPP 39
V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377
>At4g04340.3 68417.m00621 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -2
Query: 510 GNFMNLHVRSYVRF-HW 463
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
>At4g04340.2 68417.m00620 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -2
Query: 510 GNFMNLHVRSYVRF-HW 463
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
>At4g04340.1 68417.m00619 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 772
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -2
Query: 510 GNFMNLHVRSYVRF-HW 463
G F+NL +RSY++F HW
Sbjct: 59 GRFVNLELRSYLKFLHW 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,975,712
Number of Sequences: 28952
Number of extensions: 246477
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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