Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J20
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.61 
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2)                     29   3.3  
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   28   5.7  
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    27   7.6  
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)            27   7.6  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = -2

Query: 291 TLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLS 112
           T+   AYL+    + + GK + +LTG  +T    GKP  +     +L GKP  L    ++
Sbjct: 55  TIEASAYLSVRGIVRLPGKPV-ILTGEQVT--LTGKPVTLTGKPVTLTGKPVTLAGKPVT 111

Query: 111 MLLKPVPVVSK 79
           ++ KPV +  K
Sbjct: 112 LMGKPVSLTGK 122


>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 397 LSVYLHVGKLHVVCEESRHINFPIEGES*GHCVETYTPPTSVSRLHSRHI 248
           ++ YL++ ++  + ++ RHI   + G++ G  V  +    SV R H + I
Sbjct: 105 VAAYLNIPEIIRIAKKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVI 154


>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 6   SSAARS-RCTALSNRDRGLKTYWKKVS 83
           S A+R+ RC  +S  D  L+TYW+KV+
Sbjct: 238 SQASRADRCLPVSRSDSILETYWRKVN 264


>SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2)
          Length = 347

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = -1

Query: 502 QFINMSESKYVRSSFFITISDMSHIFDGVRHSR*VLSVYLHVGKLHVVCEESRHINFPIE 323
           +  N+S SK VR++     +D+S  F  +   + +  V   VGK+++VC   R+ N  + 
Sbjct: 269 ELFNLSMSK-VRTAVEWVFNDISTYFAYLDFKKDLKIVLSPVGKMYIVCALLRNANTCLY 327

Query: 322 GES 314
           G S
Sbjct: 328 GSS 330


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 72  KKVSTQLEQVSRASRVGGIRVALAFRTGFCY 164
           KK+ST+   + RAS V  +++   F TG CY
Sbjct: 613 KKMSTRSMGLKRASSVKYVQLLYLFNTGKCY 643


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 453 LPYRTCPISLMVLDIVDKSFLYTCTSVNFMLFVKKVG 343
           L  R  PI+ ++L  V + F Y   ++NF+LF+   G
Sbjct: 51  LRMRRLPIACLILAEVCERFAYYGITINFVLFLDNFG 87


>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
          Length = 110

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 189 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 61
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 65  GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 107


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 189 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 61
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 800 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,059
Number of Sequences: 59808
Number of extensions: 371550
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)