Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J20
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 1.2
At2g05645.1 68415.m00604 hypothetical protein 30 1.2
At5g36940.1 68418.m04430 amino acid permease family protein simi... 29 1.5
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 29 1.5
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 1.5
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 1.5
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 3.5
At5g25290.1 68418.m03000 F-box family protein contains F-box dom... 28 4.7
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 4.7
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 28 4.7
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit... 28 4.7
At5g22850.1 68418.m02671 aspartyl protease family protein contai... 27 6.2
At3g28850.1 68416.m03599 glutaredoxin family protein 27 6.2
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 27 6.2
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 6.2
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit... 27 8.2
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 282 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 178
RQ+ + +VD + G + P L G+ T + G PP
Sbjct: 76 RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 123 HQLSMLLKPVPVVSKPFSNMFLVHG 49
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At5g36940.1 68418.m04430 amino acid permease family protein similar
to SP|Q09143 High-affinity cationic amino acid
transporter-1 (CAT-1) {Mus musculus}; contains Pfam
profile PF00324: Amino acid permease
Length = 609
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -1
Query: 529 LINMTSLYDQFINMSESKYVRSSFFITISDMSHIFDGVRHSR*VLSVYLHVGKLHVVCEE 350
LINM L +N+ + +VR S ++ + + +IF G R+S V +VY+ L +
Sbjct: 548 LINMYLL----VNLGAATWVRVSVWLFLGVVVYIFYGRRNSSLVNAVYVSTAHLQEIRRT 603
Query: 349 SRH 341
S H
Sbjct: 604 SGH 606
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -2
Query: 258 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 79
VD+S + T P+ + +++ N + GN+ LCGKP ++L S L P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303
Query: 78 PFS 70
S
Sbjct: 304 TTS 306
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 309 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 175
G + H +HR + L +DI + G + P G+ I G P R
Sbjct: 52 GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 300 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 175
++H Q+ + +V+ +DG + P L G+ T + G PPR
Sbjct: 54 ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 102 KPVPVVSKPFSNMFLVHGLCSIT 34
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At5g25290.1 68418.m03000 F-box family protein contains F-box domain
Pfam:PF00646
Length = 397
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 381 CKYTERTYRLCLTPSKIWDMSDMVMKKDDLTYLDS 485
CK E YR T + D+SDMV+++ D YL +
Sbjct: 192 CKNGEDHYREMPTHYGLHDISDMVLQRGDHIYLST 226
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 RYGFTIN*YVYYEGEIRLSVECMF 297
R G IN +VYYE +IR V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 511 LYDQFINMSESKYVRSSFFITISDMSHIFDGVRHSR*VLSVYLHV 377
++DQFI+ E+K++R + + + + G HS L YL +
Sbjct: 742 IFDQFISSGEAKWLRQTGLVMLLPHGYDGQGPEHSSARLERYLQM 786
>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 311
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 281 RWSVCFDTMPLGFPFDREIYMPTFFTNN 364
+W+V DT P+G FD I +F N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190
>At5g22850.1 68418.m02671 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 493
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 270 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 175
L ++D +DG P + G+ T + G PPR
Sbjct: 61 LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92
>At3g28850.1 68416.m03599 glutaredoxin family protein
Length = 428
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 307 HCVETYTPPTSVSRLHSRH 251
HC Y+PP V R HS H
Sbjct: 14 HCRRGYSPPVDVQRSHSVH 32
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 208 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 41
DD +++ + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Query: 40 DNAVHLERAADD 5
+ E AA D
Sbjct: 169 --SAGFEPAAKD 178
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -2
Query: 189 GKPPRVPRGNRSLCGKP--RRLLYH 121
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 314
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +2
Query: 281 RWSVCFDTMPLGFPFDREIYMPTFFTNNMKF------TDVQVYRKDLSTMSNTIKDMGHV 442
+W+V DT P+G FD +F N F T +Y + + N + GH
Sbjct: 166 QWAVVGDTFPVGCAFDESNVHHKYFMENPDFNNPKYNTKAGIYSEGCG-LENVLMSWGHD 224
Query: 443 RY 448
Y
Sbjct: 225 DY 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,992
Number of Sequences: 28952
Number of extensions: 253262
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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