Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J19
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    87   6e-19
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   2.1  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   3.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    24   6.5  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    24   6.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    24   6.5  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    23   8.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    23   8.6  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    23   8.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 87.0 bits (206), Expect = 6e-19
 Identities = 41/76 (53%), Positives = 55/76 (72%)
 Frame = +2

Query: 65  LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWH 244
           +   F+QAAA+V+ LK  P+  +LL+LYALFKQAT GD +   +PGLLDL+GK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 245 KKAGTSKEDAQKAYIA 292
           +  G SKEDA   YI+
Sbjct: 60  ELKGKSKEDAASEYIS 75


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 219 PLKSRRPGRLAGSASPDVACLNRAYSSSKSLSLGT 115
           PLK   PGR  G++S D A ++R+ S   S  + T
Sbjct: 136 PLKWESPGRDIGTSSRDSANVSRSSSMMSSHPIPT 170


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  DQAAANVRNLKSVPSDSDLLELYALFKQATSGDAD 184
           DQ   NVR+  S P  + L+EL+    +A   DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +2

Query: 107 LKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAY 286
           L SVPS SD +     F    S + D   R  L+D   K    +    +  S   + K+ 
Sbjct: 270 LGSVPSLSDSIATVDPFFSFESFETDEKARSLLMDASLKLPQFSTPNLSSNSSSLSLKST 329

Query: 287 IAKGRKG 307
           +A+G KG
Sbjct: 330 LAEGMKG 336


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 229 LSLAPQIEETRAIGRVSIAGRGLFEQS 149
           L  A +    RA+GR +++GR  FE +
Sbjct: 227 LKQAEERRSNRAVGRSNLSGREYFESN 253


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 270 SSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDVACLNRAYSSSKS 130
           S+  V A L HA    L    RRP  L G + PD   +   +S   S
Sbjct: 36  SASSVAALLSHAPMYGLG--QRRPSFLPGVSVPDTLSVRSGFSIPSS 80


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 158 KQATSGDADPANRPGL 205
           +Q  +G  DPANRP L
Sbjct: 357 EQGFNGGEDPANRPAL 372


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 253 GFLMPRIELSLAPQIEETRAIGRVSIAGRGLFEQS 149
           G+L+ R+  SL     ++  IG + IAG  +FE++
Sbjct: 421 GWLVKRLNTSLNHSNAQSYFIGILDIAGFEIFEKN 455


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 119 PSDSDLLELYALFKQATSGDADPAN 193
           PSD +L ++  L+   T  DAD A+
Sbjct: 39  PSDYELDDVLDLYNDTTEDDADDAD 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,224
Number of Sequences: 5004
Number of extensions: 23456
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)