Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J19
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   8e-11
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 27   4.6  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_58706| Best HMM Match : IRK (HMM E-Value=0)                         26   8.1  
SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               26   8.1  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 32/75 (42%), Positives = 46/75 (61%)
 Frame = +2

Query: 65  LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWH 244
           +Q+ F QA   VR+LK++  +  LL  Y LFKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNLRDEQKLL-FYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 245 KKAGTSKEDAQKAYI 289
           +     +E A K Y+
Sbjct: 71  QHGKMPQEKAMKIYV 85


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 228 SSMRGIRKPALQRKTPRRHTLRRVERVSSHRS 323
           S  +G   P  + ++PRR++ R  ER   HRS
Sbjct: 231 SPRKGSHTPKKRSRSPRRNSQRHKERSRYHRS 262


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 276 WASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDV 166
           W +SFE+ A   HASN     K RR   L   A PDV
Sbjct: 76  WLNSFELYADDTHASNAT---KQRRRALLWHFAGPDV 109


>SB_58706| Best HMM Match : IRK (HMM E-Value=0)
          Length = 385

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 198 LVSSI*GARLS-SMRGIRKPALQRKTPRRHTLRRVER 305
           LV S+ G  LS S+ G+    L R  PR HT+R  +R
Sbjct: 162 LVQSLSGLMLSASLLGLIFAKLSRPRPRAHTIRFSKR 198


>SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 299 YPSQCMPSGRLPLKCRLSYATHR 231
           Y   C+P  R+  + RLSY  HR
Sbjct: 346 YQPPCLPDNRVVAEKRLSYLKHR 368


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 299  YPSQCMPSGRLPLKCRLSYATHR 231
            Y   C+P  R+  + RLSY  HR
Sbjct: 1109 YQPPCLPDNRVVAEKRLSYLKHR 1131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,984,646
Number of Sequences: 59808
Number of extensions: 192873
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)