Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J19
(324 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 74 3e-14
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 43 5e-05
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC... 39 9e-04
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC... 39 9e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 29 0.71
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 29 0.71
At4g23290.2 68417.m03357 protein kinase family protein contains ... 27 2.9
At4g23290.1 68417.m03356 protein kinase family protein contains ... 27 2.9
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 27 3.8
At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) / ... 27 3.8
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 26 5.0
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 26 5.0
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 73.7 bits (173), Expect = 3e-14
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = +2
Query: 59 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDA 238
M L+E+F++ A V L +PS+ DLL LY L+KQA G D +RPG+ ++ +AK+DA
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59
Query: 239 WHKKAGTSKEDAQKAYIAK 295
W G S E+A YI K
Sbjct: 60 WKAVEGKSSEEAMNDYITK 78
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 42.7 bits (96), Expect = 5e-05
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +2
Query: 77 FDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAG 256
F AAA+ R + V ++ L +LY L+K AT G A +P L + +AK+ AW K
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPC-TAPQPSALKMTARAKWQAWQKLGA 161
Query: 257 TSKEDAQKAYI 289
E+A + YI
Sbjct: 162 MPPEEAMEKYI 172
>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 362
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 137 LELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAYIA 292
+EL+ L K AT G A +P + + +AK++AW K S+E+A + Y+A
Sbjct: 257 MELFGLHKIATEGSCREA-QPMAVMISARAKWNAWQKLGNMSQEEAMEQYLA 307
>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 364
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 137 LELYALFKQATSGDADPANRPGLLDLRGKAKFDAWHKKAGTSKEDAQKAYIA 292
+EL+ L K AT G A +P + + +AK++AW K S+E+A + Y+A
Sbjct: 257 MELFGLHKIATEGSCREA-QPMAVMISARAKWNAWQKLGNMSQEEAMEQYLA 307
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +2
Query: 80 DQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRP 199
D +A NV + P D+ LL LYAL++QAT G P N P
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVG---PCNTP 62
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +2
Query: 80 DQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRP 199
D +A NV + P D+ LL LYAL++QAT G P N P
Sbjct: 29 DSSAKNV--ISKFPDDTALL-LYALYQQATVG---PCNTP 62
>At4g23290.2 68417.m03357 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 690
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 210 SRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTLAAA 85
SRRP R G+ASPD A + SS SL DFR + A +
Sbjct: 323 SRRPRRPYGTASPDDATDDLTASSG---SLRFDFRAIKAATS 361
>At4g23290.1 68417.m03356 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 600
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -1
Query: 210 SRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTLAAA 85
SRRP R G+ASPD A + SS SL DFR + A +
Sbjct: 233 SRRPRRPYGTASPDDATDDLTASSG---SLRFDFRAIKAATS 271
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 132 TYSSCMLCSNKPRPAMLTLPIA 197
T ++C LC N P P+ L P++
Sbjct: 128 TSATCPLCRNSPAPSRLATPLS 149
>At1g26670.1 68414.m03249 vesical transport v-SNARE 12 (VTI12) /
vesicle soluble NSF attachment protein receptor VTI1b
(VTI1B) receptor VTI1b identical to SP|Q9SEL5 Vesicle
transport v-SNARE 12 (AtVTI12) (Vesicle transport
v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
protein receptor VTI1b) (AtVTI1b) {Arabidopsis thaliana}
Length = 222
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 128 SDLLELYALFKQATSGDADPANRPGLLD 211
SDL +L FK+ +S DA P++R L++
Sbjct: 80 SDLNQLKKEFKRVSSADAKPSSREELME 107
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 149 ALFKQATSGDADPANRPGLLDLRGK 223
A+ A +G+A+ AN GL+ +RGK
Sbjct: 927 AIGAMAMAGNAERANAKGLIQIRGK 951
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 111 SQCLATVTYSSCMLCSNKPRPAMLTLPIALVSS---I*GARLSSMRGIRKPALQRK 269
S+C + SSC C + P + P L++ + G R S++ I+ P+ QR+
Sbjct: 41 SRCYCVSSRSSCCCCCSTPSSSSFVKPKVLINPGFVLYGVRQSTL--IQWPSFQRR 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,918,108
Number of Sequences: 28952
Number of extensions: 129696
Number of successful extensions: 323
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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