Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J18
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626     29   3.2  

>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
          Length = 369

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 537 TGTGLAWPKSL*LHNLGHKIVFPGFCKFYNR 445
           T +G+A P  L L N   +++FP  C+F NR
Sbjct: 225 THSGIALPAVLILRNCAGEVIFPA-CRFLNR 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,970
Number of Sequences: 37544
Number of extensions: 339205
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)