Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J18
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.095
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.7  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.6  
At2g28150.1 68415.m03419 expressed protein                             28   3.6  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    28   3.6  
At1g01690.1 68414.m00087 expressed protein                             28   4.7  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   6.2  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    27   8.3  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   8.3  
At4g17840.1 68417.m02661 expressed protein                             27   8.3  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   8.3  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 131 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 256
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 297 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 422
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 435 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 331
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At2g28150.1 68415.m03419 expressed protein
          Length = 540

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 420 QNTTPWCGSDYKTYKNQG 473
           +N++ WC ++YK YK++G
Sbjct: 200 KNSSSWCLAEYKVYKSEG 217


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 315 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 428
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


>At1g01690.1 68414.m00087 expressed protein
          Length = 742

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PRGCILVLKCNSPRISQLFVVMFHQC 360
           P+ C +VLK   PR  + F+V+  QC
Sbjct: 589 PKSCHIVLKALFPRFKKRFIVISCQC 614


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 225 IHSGRFPS*DLFHPFLSINKFALFS 151
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 173 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 277
           +DK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 131  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 262
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At4g17840.1 68417.m02661 expressed protein
          Length = 422

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +3

Query: 393 NARRIAFQHQNTTPWCGSDYKTYKNQGRLFCAPNC 497
           ++ R+     +++ WC S    +++  +LF +P C
Sbjct: 9   SSTRVTLSSSSSSSWCSSGSGGFRSSSKLFDSPAC 43


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 131 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 268
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,013,761
Number of Sequences: 28952
Number of extensions: 283423
Number of successful extensions: 642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)