Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J17
(297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 0.26
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 0.45
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 0.78
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 2.4
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 25 3.1
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 24 4.2
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c... 24 4.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 24 5.5
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 24 5.5
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 23 7.3
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 23 9.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 9.6
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 23 9.6
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 28.3 bits (60), Expect = 0.26
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 213 EPSRMDPNSEWLPNSIPFGQP 275
EP +DPNS W PN + P
Sbjct: 315 EPEGLDPNSWWYPNGLSNSMP 335
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 0.45
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 104 LYSRSGYLHEYKIQKADRKQREFI 175
L+S SG+ HE ++Q+ D R FI
Sbjct: 783 LFSGSGFYHEIRLQRFDNVYRYFI 806
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 0.78
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 108 IAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGR-----EPSRMDPNSEW 245
+ G+ + + ++ ENN +++ + +K+ G P+ PNSEW
Sbjct: 417 VCGIEGAFSEEFDKECENNVVVYMPEIDKDKLGGTMRLGLRPTFFQPNSEW 467
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 108 IAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGREPSRMDPNSEWLP--NSIPFG-QPL 278
I+ +A+ N +++NN+NL + + + S DP+ W P +S+ G Q L
Sbjct: 114 ISSIASKNNSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHL 173
Query: 279 *FYSLH 296
SLH
Sbjct: 174 SSLSLH 179
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 84 ARFLYMGYIAGLATCMNIRYKRQIENNANLFL 179
A + M +AG I Y R +EN +NL L
Sbjct: 956 AEWCNMPSVAGFDVLSEISYDRMLENCSNLLL 987
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 4.2
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 297 NEGYKIIMVVQRVLNSVTILNWDPFGTVPVLR-LCSIRYRQEINSRCFLSAFCILYSC 127
++ +K + + V+ N PF T ++ L SIR +CF AFC + C
Sbjct: 192 DDSFKCSFLCGDTKDFVSCSNNVPFLTQDIVNCLVSIRTCMLNAKKCFTDAFCEILRC 249
>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 217
Score = 24.2 bits (50), Expect = 4.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 95 IHGLYSRSGYLHEYKIQKADRKQREFIS*R*RMEQSLRTGTVPNGSQFRMVTEFNT 262
++GL + L + IQ + + + S E++ +T TVP QF V EFN+
Sbjct: 37 VYGLDRNTKNLEKRDIQFLENDKLDLNSHENEGEKT-KTETVPTRKQFPKVGEFNS 91
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 23.8 bits (49), Expect = 5.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 256 EFGNHSELGSIRDGSRPETLFHPLSSRNKFALFSICLLYLIF 131
+FG S L D PE + H ++ CL+Y IF
Sbjct: 210 DFGIPSSLQQSMDFLAPEYITHEIAGPESDVFSFGCLIYSIF 251
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 283 NYNGCPKGIEFGNHSELGSI 224
+YN P + FGNH +LG +
Sbjct: 287 DYN-VPFAVNFGNHDDLGDL 305
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 144 KRQIENNANLFLDDNGWNKVSGRE 215
K + ENN ++ ++ +G+NK +E
Sbjct: 283 KMEKENNLDIMIEASGFNKKQSKE 306
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 220 PEWIPIQNGYRIQYPLDNHYNF 285
PE+ + N Y+++Y LD+ F
Sbjct: 73 PEFKALANSYKLKYGLDSGIRF 94
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 84 ARFLYMGYIAG-LATCMNIRYKRQIENNANLFLDDNGWNKVSG 209
A L G I G +AT + E AN+F+D WN G
Sbjct: 2333 ASTLMTGQIVGAVATMIGRGASPNREGPANVFIDFTKWNHGDG 2375
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 232 GSIRDGSRPETLFHP 188
G IRD S P+ FHP
Sbjct: 323 GGIRDVSDPDGTFHP 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,696
Number of Sequences: 5004
Number of extensions: 25734
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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