Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J17
(297 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 0.65
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 27 2.0
02_05_0088 + 25712753-25713076,25713168-25713261,25713646-257137... 27 2.0
04_03_0185 + 12419956-12420001,12420133-12421373 27 2.6
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 26 4.6
12_02_1051 + 25696499-25696888 26 6.0
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 26 6.0
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 26 6.0
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 26 6.0
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891... 26 6.0
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 26 6.0
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 25 8.0
01_03_0192 + 13618129-13618393,13618652-13618721,13619052-136192... 25 8.0
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 0.65
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 274 GCPKGIEFGNHSELGSIRDG-SRPETLFHPLSSRNKFALFSICLLYLIFMQVARPAI*PM 98
GCPK + F N L SI+ G S ETL L L C L L+ + V + +
Sbjct: 963 GCPKLMVFNNVKSLRSIQLGISEMETLPAYLQDTKLEQLEIACSLKLLKLMVKKESW-SE 1021
Query: 97 YKKRAQIIHVK 65
+ K + I+HVK
Sbjct: 1022 WGKISNIMHVK 1032
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 84 ARFLYMGYIAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGREPSRM 227
++F+ +GY+A ++ R+ + I N + L + G+N +SG PS +
Sbjct: 212 SKFVSIGYLAASQNMLSGRFPQAILNLSTLDVLYLGFNHLSGDLPSNL 259
>02_05_0088 +
25712753-25713076,25713168-25713261,25713646-25713767,
25714005-25714127,25714471-25714575,25714673-25714714
Length = 269
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 45 NYFHYYNLTWIICARFLYMGYIAGLATCMNIRYKRQI 155
NY Y + W + + L + + GL + + YKR +
Sbjct: 52 NYLQYDTIIWAVISLLLVLAWGVGLLMLLYLPYKRYV 88
>04_03_0185 + 12419956-12420001,12420133-12421373
Length = 428
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 27 YKICHINYFHYYNLTWIICARFLY--MGYIAGLATCMNIRYKRQIENNANLFLDDNGWNK 200
+ I H + + L+W C R G + L + ++ + +AN+ LD N K
Sbjct: 173 FGILHADARSSFRLSWDDCLRIATEAAGALCYLHSAASVSVFHRDVKSANILLDANCTAK 232
Query: 201 VSGREPSRMDPNSE 242
VS SR+ P +E
Sbjct: 233 VSDFGASRLVPINE 246
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 42 INYFHYYNLTWIICARFLYMGYIAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGREPS 221
+N H Y ++C L + L+T + KRQ + NL L NG K+ G
Sbjct: 726 LNRCHGYKTLKLMCETELGIQTQCFLSTAAKLDEKRQDQYITNLALKING--KIGGSN-M 782
Query: 222 RMDPNS 239
++DP+S
Sbjct: 783 QLDPDS 788
>12_02_1051 + 25696499-25696888
Length = 129
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = -1
Query: 234 WDPFGTVPVLRLCSIRYRQEINSRCFLSAFCILYSCR*PDRLYNPCIRSA 85
WD +G ++ R E N + + C PDR P IR A
Sbjct: 21 WDLYGNGRIIDAADHRLGGEFNGEEMEAVMVVGLWCAHPDRSLRPTIRQA 70
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 216 VPVLRLCSIRYRQEINSRCFLSAFCILYSCR*PDR 112
+P++ +C+ RY Q++ S L +C+L + R P +
Sbjct: 557 IPIICICNDRYSQKLKS---LVNYCLLLNFRKPTK 588
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 75 IICARFLYMGYIAGLATCMNIRYKRQIENNANLFLDDN 188
+I F +M +A LA + I Y+R+I+ F D+N
Sbjct: 100 VIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEN 137
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 24 CYKICHINYFHYYNLTWIICARFLYMGYIAGLAT 125
C+ +CHINY L + ICA L Y+ + T
Sbjct: 204 CF-VCHINYQILSQLNFSICAFRLPSRYLNAIQT 236
>03_06_0732 -
35788417-35788485,35788776-35788871,35788963-35789148,
35789898-35789959,35790063-35790304,35790418-35791517
Length = 584
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 207 GREPSRMDPNSEWLPNSIPF 266
GR PS P+S W+P S+ F
Sbjct: 488 GRAPSPRSPSSPWMPFSMLF 507
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 160 FSICLLYLIFMQVARPAI*PMYKK 89
+S+CLL L Q PAI P K+
Sbjct: 140 YSLCLLVLFHFQTCEPAILPPLKE 163
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 60 YNLTWIICARFLY--MGYIAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGREPSRMDP 233
+ L+W C R G + L + ++ + ++N+ LD N KVS SR+ P
Sbjct: 423 FTLSWDQCLRIATEAAGALYYLHSAASVSVLHRDVKSSNILLDANYTAKVSDFGVSRLIP 482
Query: 234 NSE 242
N +
Sbjct: 483 NDQ 485
>01_03_0192 +
13618129-13618393,13618652-13618721,13619052-13619220,
13619385-13619495,13619742-13619834,13619912-13620097
Length = 297
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 273 VVQRVLNSVTILNWDPFGTV 214
V+QR+ N++T+ + P GTV
Sbjct: 195 VIQRISNNLTVCHKQPIGTV 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,660
Number of Sequences: 37544
Number of extensions: 153104
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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