Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J17
         (297 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.51 
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      27   2.1  
SB_14162| Best HMM Match : TonB_dep_Rec (HMM E-Value=3.7)              27   2.7  
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.7  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)                    26   4.7  
SB_34323| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0014)           26   4.7  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.7  
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.7  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      25   8.3  

>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 241 SELGSIRDGSRPETLFHP 188
           +EL  +R+G  PET+FHP
Sbjct: 592 AELAKLREGGSPETVFHP 609


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 39  HINYFHYYNLTWIICARFLYMGYIAGLATCMNIRYKRQIENNANLFLDDNGWNKVSG 209
           ++N +  Y L W +    + M + A   TC+    K Q  +N  L + DN    V+G
Sbjct: 367 YLNRWKRYRLLWKLDKSNMVMKFAAKNPTCIAYDEKLQFYSNLVLEVSDNETELVNG 423


>SB_14162| Best HMM Match : TonB_dep_Rec (HMM E-Value=3.7)
          Length = 412

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 156 ENNANLF----LDDNGWNKVSGREPSRMDPNSEWL 248
           +N A LF    L DNGW + SGRE   +     WL
Sbjct: 118 DNQALLFAASALQDNGWREQSGRERQEVLLKHLWL 152


>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 108 IAGLATCMNIRYKRQIENNANLFLDDNGWNKVSGREPSRMDPNSEWLPNSIPF 266
           +A   T  N RYK  +E NAN    D+    +  R P    PN  W P    F
Sbjct: 312 LARKITMYNSRYK--MEANANQQASDSQAPVLKPRSPPCSPPNYPWRPRGACF 362


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 131  HAGSQTGYITHV*EARTDYPCQIIIMEIINMTNFVAQISGIRH 3
            H G+  G+IT+   A   +P  I+      +T     + G+RH
Sbjct: 3468 HRGTHIGFITYSDSATIAFPFNIVSGTRYTVTAISQLVDGVRH 3510


>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
          Length = 391

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 283 NYNGCPKGIEFGNHSEL 233
           N   CPKG+++G H +L
Sbjct: 137 NGTQCPKGLQYGGHDDL 153


>SB_34323| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0014)
          Length = 221

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 280 YNGCPKGIEFGNHSELGSIRDGSRPETLFHPLSSRNKFALFSICLLY 140
           YN C   +  GN+     + DG+ P+      S +++F L S   L+
Sbjct: 102 YNYCSFMVRCGNYPHPLGMEDGTLPDENITASSEKDRFRLASFARLH 148


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 144  KRQIENNANLF--LDDNGWNKVSGREPSRMDPNSEWLPNSIPFGQPL 278
            KR I NN +    L+ N + K   +  +  DPN+E  P    FG+P+
Sbjct: 967  KRLITNNTDPHGDLNTNEFQKAILQYRNAPDPNTELSPAQCVFGRPI 1013


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 177 LDDNGWNKVSGREPSRMDPNSEWLPNSIPFGQPL 278
           LD N WNKV  +    M   +  LP+S+    P+
Sbjct: 105 LDANSWNKVEYQNSKEMHLITSTLPSSLTPAAPI 138


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 IRYKRQIENNANLFLDDNGWNKVSGREPSRMDPNS 239
           I Y   +EN A+    +NG++  + R P R +P++
Sbjct: 444 ISYGFPVENRADTAAMENGYHTKTKRNPYRRNPDT 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,658,616
Number of Sequences: 59808
Number of extensions: 186389
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)