Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J17
         (297 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13880.1 68417.m02150 leucine-rich repeat family protein cont...    27   3.0  
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    26   3.9  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    25   6.9  
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi...    25   6.9  
At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibia...    25   6.9  
At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibia...    25   6.9  
At5g24890.1 68418.m02947 expressed protein weak similarity to MT...    25   9.1  
At3g04420.1 68416.m00468 no apical meristem (NAM) family protein...    25   9.1  
At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    25   9.1  
At1g55620.1 68414.m06366 voltage-gated chloride channel family p...    25   9.1  
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ...    25   9.1  

>At4g13880.1 68417.m02150 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 725

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 117 LATCMNIRYKRQIENNANLFLDDNGWNKVSGREP 218
           LA+C  + + + +EN  +LF  D   N + G+ P
Sbjct: 278 LASCNIVEFPKFLENQTSLFYLDISANHIEGQVP 311


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +2

Query: 71  MDNLCALLIHGLYSRSGYLHEYKIQKADRKQREFIS*R*RMEQSLRTGTVPNGSQFRMVT 250
           M NL   L+  + SR  + +   I+   +   +    R    +++    V    +F M+T
Sbjct: 3   MSNLPKDLVEEILSRVPFKYLRAIRSTCKNWYDLSKNRSFANKNIDKAAVSGEKEFLMIT 62

Query: 251 EFNTLWTTI 277
           +FN  W  +
Sbjct: 63  QFNVFWVGV 71


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 196 FHPLSSRNKFALFSICLLYLIFMQV 122
           F P S++  FA FS+ +L L+F+ +
Sbjct: 406 FLPNSAQGNFASFSLTILLLLFISI 430


>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA binding protein PufA
           [Dictyostelium discoideum] gi|5106561|gb|AAD39751
          Length = 524

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 282 IIMVVQRVLNSVTILNWDPFGTVPVLRLCSI 190
           ++++ + V+N+V  L  DPFG   + +L  +
Sbjct: 271 VMIIFKEVINNVIELGTDPFGNYLIQKLIEV 301


>At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 413

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 KGIEFGNHSELGSIRDGSRPETLFHPLSSRNKFALFSI 152
           KG++ G +S+ G       P +LFH +   + FA + +
Sbjct: 126 KGLKLGIYSDAGVFTCEVHPGSLFHEVDDADIFASWGV 163


>At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 437

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 265 KGIEFGNHSELGSIRDGSRPETLFHPLSSRNKFALFSI 152
           KG++ G +S+ G       P +LFH +   + FA + +
Sbjct: 150 KGLKLGIYSDAGVFTCEVHPGSLFHEVDDADIFASWGV 187


>At5g24890.1 68418.m02947 expressed protein weak similarity to MTD1
           [Medicago truncatula] GI:9294810
          Length = 240

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 283 NYNGCPKGIEFGNHSELGSIRDGSRPETLFHPLSSRNKFAL 161
           +Y G  K   FGN  E+GS+++ ++ E   +PL+ R +  +
Sbjct: 114 HYKG--KSKSFGNLGEIGSVKEVAKQE---NPLNKRRRLQI 149


>At3g04420.1 68416.m00468 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 342

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 270 VQRVLNSVTILNWDPFGTVPVLRLCSIRYRQEINSRCFLS 151
           V RV+++VTI ++DP+  +P    C  R + +  S CF S
Sbjct: 33  VDRVISTVTIRSFDPW-ELP----CQSRIKLKDESWCFFS 67


>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 105 YIAGLATCMNIRYKRQIENNANLFLDDN 188
           ++AG+ T  +IR  R + NNA+  LD+N
Sbjct: 657 FLAGILTHGDIR--RYLSNNASTILDEN 682


>At1g55620.1 68414.m06366 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 585

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 105 YIAGLATCMNIRYKRQIENNANLFLDDN 188
           ++AG+ T  +IR  R + NNA+  LD+N
Sbjct: 461 FLAGILTHGDIR--RYLSNNASTILDEN 486


>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
           MLO-like protein 4 (MLO4) identical to membrane protein
           Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 573

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 279 IMVVQRVLNSVTILNWDPFGTVPV 208
           +M+  R+++ V +  W  +GTVP+
Sbjct: 393 VMISSRLISGVLVQFWCSYGTVPL 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,132
Number of Sequences: 28952
Number of extensions: 130320
Number of successful extensions: 352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)