Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J16
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36805| Best HMM Match : GED (HMM E-Value=0.24)                      30   1.4  
SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_59317| Best HMM Match : APT (HMM E-Value=7.8)                       28   5.7  
SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)                      28   5.7  
SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)            28   7.6  
SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)                       28   7.6  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   7.6  

>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 377

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 146 QDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYY 295
           + V QV +  ++ K G+ +D   +I+N  ++K V  +LK Y      KYY
Sbjct: 49  EGVGQVVIHRKFMKPGELFDFPVSIENGKSRKFVSNWLKKYPWLAYSKYY 98


>SB_17137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 92  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 256
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 401 KDADIAPVPKQKPVLDINKHLRPISLTPVLSKLAEDYIVEQHLKPAVLKKVDVNQF 456


>SB_59317| Best HMM Match : APT (HMM E-Value=7.8)
          Length = 229

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 92  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 256
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 35  KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 90


>SB_29242| Best HMM Match : CIDE-N (HMM E-Value=5)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 92  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKA-VEEF 256
           KD D   V +QK VL + + +  +++     K+ +DY VE ++     KK  V +F
Sbjct: 108 KDADIAPVPKQKPVLDVNKHLRPISLTPVLSKLAEDYVVEQHLKPAVLKKVDVNQF 163


>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 125 KKVLSLFQDVDQVNVDDEYYKIGKDY-DVEAN-IDNYTNKKAVEEFLKLYRI 274
           ++ +SLF+DVD+   D+ Y KI   Y D+  + ID Y    +   F KL ++
Sbjct: 93  ERCISLFKDVDKYKHDERYLKIWIQYADLCTDPIDVYDYMHSQSMFSKLAKL 144


>SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 519 RIVDKLHKELVKRIHEYHCAG*LQYNMRTRTVPQFRCTRAKAALL*KVSK-SLA**NKWK 343
           ++  + H    K    YHC    QY++R    P  +C+RA  A   K S+ ++A   K+ 
Sbjct: 71  KVFARYHGHQYKVFARYHCH---QYSVRALPWPPIQCSRATMASNTKYSRATMATNTKYS 127

Query: 342 RA 337
           RA
Sbjct: 128 RA 129


>SB_17470| Best HMM Match : HC2 (HMM E-Value=2.8)
          Length = 464

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 519 RIVDKLHKELVKRIHEYHCAG*LQYNMRTRTVPQFRCTRAKAALL*KVSK-SLA**NKWK 343
           ++  + H    K    YHC    QY++R    P  +C+RA  A   K S+ ++A   K+ 
Sbjct: 71  KVFARYHGHQYKVFARYHCH---QYSVRALPWPPIQCSRATMASNTKYSRATMATNTKYS 127

Query: 342 RA 337
           RA
Sbjct: 128 RA 129



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 519 RIVDKLHKELVKRIHEYHCAG*LQYNMRTRTVPQFRCTRAKAALL*KVSK-SLA**NKWK 343
           ++  + H    K    YHC    QY++R    P  +C+RA  A   K S+ ++A   K+ 
Sbjct: 310 KVFARYHGHQYKVFARYHCH---QYSVRALPWPPIQCSRATMASNTKYSRATMATNTKYS 366

Query: 342 RA 337
           RA
Sbjct: 367 RA 368


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  QCGVTENVSLQDKRCRRSVCG 117
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,754,108
Number of Sequences: 59808
Number of extensions: 410436
Number of successful extensions: 1741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)