Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J16
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.                 30   6.2  
BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle glycop...    30   6.2  
BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle glycop...    30   6.2  
BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle glycop...    30   6.2  
BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle glycop...    30   6.2  
AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein.     30   6.2  
AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.     30   6.2  
AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens ...    30   6.2  
AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.                30   6.2  

>EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.
          Length = 1866

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   NYEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 99
           +++ CP     HCP A + CG  EN+S + ++C
Sbjct: 668 DFDGCPLEP--HCPEALVGCGQIENLSFKSRKC 698


>BC100827-1|AAI00828.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 62  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 223
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100826-1|AAI00827.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 62  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 223
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100825-1|AAI00826.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 62  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 223
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>BC100824-1|AAI00825.1|  727|Homo sapiens synaptic vesicle
           glycoprotein 2C protein.
          Length = 727

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 62  VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 223
           V  +T     + VD    E  ++  S FQD +    DD+YY  G+ Y+ EAN D
Sbjct: 22  VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72


>AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein.
          Length = 1056

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   NYEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 99
           +++ CP     HCP A + CG  EN+S + ++C
Sbjct: 395 DFDGCPLEP--HCPEALVGCGQIENLSFKSRKC 425


>AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.
          Length = 733

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   NYEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 99
           +++ CP     HCP A + CG  EN+S + ++C
Sbjct: 681 DFDGCPLEP--HCPEALVGCGQIENLSFKSRKC 711


>AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21709 fis, clone COL10077. ).
          Length = 1097

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   NYEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 99
           +++ CP     HCP A + CG  EN+S + ++C
Sbjct: 353 DFDGCPLEP--HCPEALVGCGQIENLSFKSRKC 383


>AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.
          Length = 1866

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   NYEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 99
           +++ CP     HCP A + CG  EN+S + ++C
Sbjct: 668 DFDGCPLEP--HCPEALVGCGQIENLSFKSRKC 698


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,634,126
Number of Sequences: 237096
Number of extensions: 1874496
Number of successful extensions: 3755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3755
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)