Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J16
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   3.5  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   3.5  
At4g22320.1 68417.m03227 expressed protein                             28   6.2  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   6.2  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   6.2  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   8.2  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   8.2  
At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, putati...    27   8.2  

>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 164 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 274
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 116 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 289
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN       ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 290 YYEFSIFYQ 316
             EF +F Q
Sbjct: 142 ALEFRLFRQ 150


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 92  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 253
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 41  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 193
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 403 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 257
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 298 LIVLGKITDSVQFQEFFNSFLIGVVI 221
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 298 LIVLGKITDSVQFQEFFNSFLIGVVI 221
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, putative
           similar to cytochrome c oxidase subunit II [Brassica
           rapa] GI:2707741; contains Pfam profile PF02790:
           Cytochrome C oxidase subunit II, transmembrane domain
          Length = 291

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 650 GIVGVIHILLFFLYNSIINSLCIVKNTVWHF 558
           GI+ + H + FFL   ++  L I+   +WHF
Sbjct: 34  GIIDLHHDIFFFLILILVFVLWILVRALWHF 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,702,195
Number of Sequences: 28952
Number of extensions: 272178
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)