Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J13
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.5  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   1.9  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    26   4.5  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 241 SFTPVDDNHTLISNFYPVIVHKHRVGGSFSHLHHEGF 131
           S  P+  N T++ N+Y ++  KH    +F H H E +
Sbjct: 328 SDNPITANSTIL-NYYDIVTIKHMGTNAFLHSHPEKY 363


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 253 RAAHSFTPVD-DNHTLISNFYPVIVHK 176
           R AH +T  D ++H+L  N Y V VH+
Sbjct: 401 RFAHGYTEADGESHSLPENVYSVFVHQ 427


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 241 SFTPVDDNHTLISNFYPVIVHKHRV 167
           S T +  N  L+ NFY V++  HR+
Sbjct: 97  SLTQMTGNEPLLKNFYNVLLDNHRL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,051
Number of Sequences: 5004
Number of extensions: 52936
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)