Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J13
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           33   0.29 
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             32   0.39 
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 31   0.89 
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)                    30   2.1  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   6.3  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 320 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 496
           +H N   WMT ++ G   +RQG ++ +     L +L  +++   +   K   +   VKN
Sbjct: 351 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRDKVGKAIASAKHVFYRTKVKN 409


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 443 SHKMCDIKMFMWNEPVKNGYWPKI-RLPNGDEMPVRQNNFVP 565
           +HK   IK+    E V+N ++ K  R PNG+++     NFVP
Sbjct: 91  THKKVHIKLVTEMESVRNRWFDKFGRYPNGEDIDRMYKNFVP 132


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 320 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 496
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 299 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 357


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 320 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 496
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 337 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 395


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 320 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 496
           +H N   WMT ++ G   +RQG ++ +     L +L   ++   +   K   +   VKN
Sbjct: 314 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRYKVGKAIARAKHVFYRTKVKN 372


>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
          Length = 339

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 124 DMGVYKEVRVNLVRSG*SNTDAVRPVEDCSSESIY 20
           +MG    V+ N +RSG  +TD   PV    S+S+Y
Sbjct: 151 NMGWASNVKDNWIRSGDYHTDTAHPVNITDSQSLY 185


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 86   YEIYPYFFVDSHVINKAFMMKMTK 157
            +++YP F++D+H+ NKA +  + K
Sbjct: 1787 HDVYPQFYLDTHLTNKAVLEAVDK 1810


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = -3

Query: 433 HS*SS*KLTIRVHEYLSLTLFVQT-VHFVSHPIRIIHMKVIHVSVKIDVFCEVRILVVFR 257
           H+ S  +  I  H +    LF +T +H  SHP  ++  + I  +  I        L+  R
Sbjct: 252 HTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIHTHSYSHALLFTR 311

Query: 256 *RAAHSFTPVDDNHTLISNFYPVIVHKHRVGGSFSH 149
               H+ +     H+L+  F  +  H H    SF+H
Sbjct: 312 -TLIHTHS---HPHSLLFTFTIIRTHSHSHALSFTH 343


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 302 NTYMYYLHMNYPYWMTDEVYGLNKERQGE 388
           NT  YY+H+NY  + +D  Y +     G+
Sbjct: 66  NTSSYYIHLNYKDYESDYFYTIGSYNSGD 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,821,545
Number of Sequences: 59808
Number of extensions: 380958
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)