Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J13
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot...    31   0.55 
At5g15830.1 68418.m01852 bZIP transcription factor family protei...    28   5.1  
At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he...    28   5.1  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    28   5.1  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    28   6.8  
At2g06820.1 68415.m00761 expressed protein low similarity to zin...    27   9.0  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    27   9.0  
At1g03190.2 68414.m00297 DNA repair protein / transcription fact...    27   9.0  
At1g03190.1 68414.m00296 DNA repair protein / transcription fact...    27   9.0  

>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II SP:P08819
           [Triticum aestivum] (Carlsberg Res. Commun.
           52:297-311(1987))
          Length = 478

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 182 NYYGIKVTDKSMVVIDWRKGVRRSLSEDDKYSYFTED----VDLNTYMYYLHMNYPYW 343
           +Y G  V DKS  V DW K VR     D  YS + E+    VD+   ++    N   W
Sbjct: 301 SYLGFGVNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVARW 358


>At5g15830.1 68418.m01852 bZIP transcription factor family protein
           similar to common plant regulatory factor 7 GI:9650828
           from [Petroselinum crispum]; contains Pfam profile:
           PF00170 bZIP transcription factor
          Length = 186

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/92 (18%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +2

Query: 347 TDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKNGYWPKI-RLP 523
           T+E++ +N+ +Q    M +N +   R RM +  H    +    W     +    K+ ++ 
Sbjct: 65  TEEIFVINERKQRR--MVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVS 122

Query: 524 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQM 619
           + +++ +++N+   +  ENL+L+ ++  ++++
Sbjct: 123 DNNDLVIQENS--SLKEENLELRQVITSMKKL 152


>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
           shock transcription factor 1 (HSTF1) identical to heat
           shock transcription factor 1 (HSF1) SP:P41151 from
           [Arabidopsis thaliana] ;contains Pfam profile: PF00447
           HSF-type DNA-binding domain
          Length = 495

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +2

Query: 68  ITLPAPYEIYPYFFVDSHVINKAFMMKMTKAATDPVLMNYYGIKVTDKSMVVIDWRKGVR 247
           +T P P   +P   ++++ +   F+ K      DP          T+ S +V D  +  R
Sbjct: 30  VTAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSR 89

Query: 248 RSLSEDDKYSYFTEDV-DLNTY 310
             L +  K++ F+  V  LNTY
Sbjct: 90  DLLPKYFKHNNFSSFVRQLNTY 111


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  SDCVGITLPAPYEIYPYFFVDSHVINKAFMMKMTKAAT-DPVLMNYYGI 196
           SD +G+T+    +   Y F DSH I+K     + +A T     +NYY I
Sbjct: 242 SDELGLTIMNQCDFEDYTFTDSHNISKLCEAAVNQAGTIITQYVNYYDI 290


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 530 DEMPVRQNNFVPVTSENLKLKMLLDDV---EQMIREGILTGKIERRDGTMINLKKPED 694
           DEM  +++  VPV   N +LKML D V   ++ + EG     +E       N ++P+D
Sbjct: 193 DEMTFKEDK-VPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLESSRIRDANRRRPDD 249


>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +2

Query: 566 VTSENLKLKMLLDDVEQMIREGIL 637
           +TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 530  DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 628
            DE+PV  Q+  + + +EN KLK L+  +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070


>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 41  VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 181
           VF R   V IT    +P ++YP     + V++++F M MT+    P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495


>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 41  VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 181
           VF R   V IT    +P ++YP     + V++++F M MT+    P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,430
Number of Sequences: 28952
Number of extensions: 267203
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)