Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J12
(280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 120 5e-29
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 119 7e-29
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 2.6
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 24 3.5
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 3.5
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 24 4.6
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 24 4.6
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 23 6.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 23 6.1
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 6.1
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 23 8.0
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 120 bits (288), Expect = 5e-29
Identities = 53/86 (61%), Positives = 72/86 (83%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 201
ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 202 AWRHFYWYLTNEGIEYLRIFLHLPPE 279
W FY+ LTNEG+EYLR +LHLP E
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAE 85
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 119 bits (287), Expect = 7e-29
Identities = 53/86 (61%), Positives = 71/86 (82%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 201
ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 202 AWRHFYWYLTNEGIEYLRIFLHLPPE 279
W FY+ LTNEG+EYLR +LHLP E
Sbjct: 60 NWGWFYYTLTNEGVEYLREYLHLPAE 85
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 2.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 141 VRDLLEIWMFGCMVVFLSYHDSLLE 67
+ + +IW FGC + + +H S E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 222 PVKMPPCELFLNISS 178
P +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 234 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 145
+C +P++ P C L L +S+ S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 212 CLHANCSLTYPLDLSDCIALI 150
CLH N SLT+P S+ ++
Sbjct: 368 CLHLNASLTHPDSKSEASEVV 388
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 23.8 bits (49), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 58 EYLFKEGVMVAKKDYHAPKHPDLEK 132
E L G +VA DY A HPD+E+
Sbjct: 99 ERLSALGNIVACNDYVALVHPDIER 123
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 272 GKCRKILRYSIPSFVK 225
GKC ++RYS PS K
Sbjct: 193 GKCNYVIRYSPPSSSK 208
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 90 SYHDSLLEEVLIDRNTVLFWH 28
+YH L +E+ I +N ++ WH
Sbjct: 331 NYHWYLKKEINIPQNALISWH 351
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 112 KHPDLEKIPNLQVIKAMQSLKSRGY-VKEQFAWRHF 216
+HP EK+ L+ +KAMQ + R + ++ Q +HF
Sbjct: 70 RHP--EKLQKLRKMKAMQERQERNWSLERQRLVQHF 103
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 150 HLEVRDLLEIWMFGCMVVF 94
HLE+ + L WM GC+VV+
Sbjct: 26 HLELVEKLG-WMAGCVVVY 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,400
Number of Sequences: 5004
Number of extensions: 21148
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -