Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J12
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 122 4e-29
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 122 4e-29
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 119 4e-28
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.17
02_01_0462 + 3332464-3332470,3333606-3335806 27 1.6
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 2.1
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 2.8
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608 26 3.7
01_06_0739 - 31601656-31602233,31602777-31602906 26 3.7
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 26 4.9
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 26 4.9
03_06_0126 + 31865339-31867943,31868176-31868660 26 4.9
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 25 6.5
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 25 8.6
01_05_0730 + 24695311-24695326,24695590-24695725,24696994-246971... 25 8.6
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 25 8.6
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 122 bits (294), Expect = 4e-29
Identities = 52/86 (60%), Positives = 72/86 (83%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 201
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 202 AWRHFYWYLTNEGIEYLRIFLHLPPE 279
+W+++YWYLTN+GIE+LR +L+LP E
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSE 85
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 122 bits (294), Expect = 4e-29
Identities = 52/86 (60%), Positives = 72/86 (83%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 201
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 202 AWRHFYWYLTNEGIEYLRIFLHLPPE 279
+W+++YWYLTN+GIE+LR +L+LP E
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSE 85
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 119 bits (286), Expect = 4e-28
Identities = 51/86 (59%), Positives = 70/86 (81%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 201
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 202 AWRHFYWYLTNEGIEYLRIFLHLPPE 279
+W+H+YWYLTN+GIE+LR +L+LP E
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSE 85
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 52 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 228
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 229 TNEGIE-YLRIFLHLP 273
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 170 LNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 277
L +M RN +GGI I + V+ +L+ SC LL
Sbjct: 575 LQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 40 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 138
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 52 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 228
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 229 TNEGI 243
N +
Sbjct: 158 PNGSV 162
>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
Length = 276
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 31 PKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 183
P R+S Y+ + + MV DY P DL+ + +L + ++ +K++G
Sbjct: 144 PSAGRISGYDMVMQSWEMVCDADYEFPLQIDLQDVEVHVRGDLGYVTCLELVKTKG 199
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 22 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 183
++ P R+S Y+ + + MV DY P + DL+ + +L + ++ +K++G
Sbjct: 146 VIHPAAGRISGYDVVMQSWEMVCGADYEFPLNIDLKNVEVHVHGDLGYVTCLEVVKTKG 204
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = -2
Query: 159 SFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLF 34
S + L + EIW++GC++ F + ++++++ + LF
Sbjct: 663 SLNKLVSLTIAEIWLYGCLLRFRCHFFTMVDDLSNEDFNTLF 704
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 28 MPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLE 129
+P + R I Y F+ +V + + PK PD+E
Sbjct: 269 IPDEVRTEIEPYFFEHASIVDEDNQKLPKLPDIE 302
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 161 CNHLNLEDMLRNSSHGGIFTGI*QMRVLNTLEFSCTYL 274
C L D+ RN+ G I I MR+LN L S +L
Sbjct: 528 CRLLTYLDLSRNNISGKIPPAISGMRILNYLNLSRNHL 565
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 151 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHL 270
I + L S G WR F+ YLT E I YL +HL
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHL 647
>06_03_0473 +
21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 214 FYWYLTNE--GIEYLRIFLHLPPE 279
FY Y+ N +E ++ ++HLPPE
Sbjct: 926 FYSYMENYIISVERIKQYMHLPPE 949
>01_05_0730 +
24695311-24695326,24695590-24695725,24696994-24697108,
24697447-24697455
Length = 91
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 202 AWRHFYWYL 228
AW H YWYL
Sbjct: 71 AWEHLYWYL 79
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 28 MPKQNRVSI-YEYLFKEGVMVAK--KDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQ 198
+P +N + + Y+ ++ G VA +H PK K+ + AM KS V
Sbjct: 165 LPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKAKLQ----VNAM--FKS---VAGS 215
Query: 199 FAWRHFYWYLT 231
FAW F W+ T
Sbjct: 216 FAWAFFQWFYT 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,648,660
Number of Sequences: 37544
Number of extensions: 132080
Number of successful extensions: 293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -