Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J10
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    46   4e-06
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    29   0.50 
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   6.2  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
 Frame = +2

Query: 215 FTISSIARYYIK-FTIFTILCLLFATAPMPLMLLRPFSPK---NALTPAALLRLSARMLG 382
           FT+    RY+ + F   T L +  A   +  ++ R          LT  A   L++ +L 
Sbjct: 25  FTLPKCIRYHFRYFACHTFLAISSAYGVIASVVARLCGYPVMGQYLTAKAYYGLASTILD 84

Query: 383 IRWKVRGLENVDNSRGSVILLNHQSALDLYVLAVLWPIMARCTVVAKRSLQYLVPFGTAT 562
            R+K+   E +   + +V+++NHQS LD  +LA+        +V+AK+SL+Y+   G   
Sbjct: 85  FRFKIENEEILRKHKSAVLVVNHQSELD--ILAIGRTFGPNYSVIAKKSLRYVPILGWFM 142

Query: 563 WLWGTVFI 586
            L   VFI
Sbjct: 143 ILSDVVFI 150


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 27/101 (26%), Positives = 45/101 (44%)
 Frame = +2

Query: 245 IKFTIFTILCLLFATAPMPLMLLRPFSPKNALTPAALLRLSARMLGIRWKVRGLENVDNS 424
           IK TIF +  LLF+ A +P M  R  S  N  +      L A+ +    +    + + ++
Sbjct: 454 IKTTIFPVSQLLFSNANVPAMCQRLRSLNNTKSNP----LPAKSIDSLERALSSKKITDT 509

Query: 425 RGSVILLNHQSALDLYVLAVLWPIMARCTVVAKRSLQYLVP 547
             + +L    S LD + LA  +P +    ++A  S   L P
Sbjct: 510 EKNELLETCLSILDSWSLAERFPALDALRLLAINSSSDLAP 550


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 247 YIVSSDRADREQNDQQRHDTTQNYVETRHVCDVDENSFKKN 125
           +I++    +   N Q + +   N VET  + D DENS   N
Sbjct: 462 HIIADKNLEPTSNIQLKKNPDGNLVETSELSDSDENSVLSN 502


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 176 VVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATA 292
           ++ GCV+  L ++  +S    Y++   IF +LC    +A
Sbjct: 696 MIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVISA 734


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 149  DITNMSGFNVVLGCVMALLIILFTISSIARYYIKF 253
            ++  M GF   +G      +IL T+++   YY KF
Sbjct: 1718 ELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,300
Number of Sequences: 5004
Number of extensions: 47374
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)