Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J10
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0105 - 775740-776624,777633-778268 38 0.008
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 36 0.024
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 34 0.072
04_04_1021 + 30190403-30190450,30191245-30192924 33 0.17
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 32 0.39
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 27 2.6
03_01_0398 + 3092577-3093857 29 2.7
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 28 6.3
06_02_0079 - 11512747-11512770,11513281-11513321,11513409-115135... 27 8.3
01_06_0867 - 32586254-32586574,32586756-32587172 27 8.3
>02_01_0105 - 775740-776624,777633-778268
Length = 506
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Frame = +2
Query: 278 LFATAPMPL----MLLRPFSPKNALTPAALLRLSARMLGIRWKVRGLENV---DNSRGSV 436
LFA A +P+ LLR F N PA L+R + R+ GIR VRG + GS+
Sbjct: 252 LFALAYLPVGFAVALLRVFL--NLPVPARLVRHTYRLTGIRLAVRGAPPPPPRPGTPGSL 309
Query: 437 ILLNHQSALDLYVLAV 484
++ NH++ALD ++++
Sbjct: 310 LVCNHRTALDPIIVSI 325
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 35.9 bits (79), Expect = 0.024
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 395 VRGLENVD-NSRGSVILLNHQSALDLYVLAVLWPIMARC-TVVAKRSLQYLVPFGTATWL 568
V G+EN+ NS +V + NHQS LD+Y L L RC ++K S+ G A +L
Sbjct: 165 VEGMENLPPNSSPAVYVANHQSFLDIYTLLTL----GRCFKFISKTSIFMFPIIGWAMYL 220
Query: 569 WGTV 580
G +
Sbjct: 221 LGVI 224
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = +2
Query: 359 RLSARMLGIRWKVRGLENVDNSRGSVILLNHQSALDLYVLAVLWPIMARCTVVAKRSLQY 538
R+ +LG K+ G+EN+ N+RG + + NH S LD+++ V+W +AK+ + +
Sbjct: 34 RMLMWILGNPIKLEGMENL-NTRG-IFICNHASPLDIFL--VMWLAPTGTVGIAKKEIIW 89
Query: 539 LVPFG 553
FG
Sbjct: 90 YPLFG 94
>04_04_1021 + 30190403-30190450,30191245-30192924
Length = 575
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 185 GCVMALLIILFTISSIARYYIKFTIFTILCLLFATAPMPLMLLRPFSPKNALTPAALLRL 364
G M + I+ FTI + + + F +F +L + + + LLR FSP N P+ L R+
Sbjct: 373 GAAMNMRIMSFTIPAASM--VSFEVFCVLAWVLVYGSVIVPLLRSFSPANG-EPSQLRRM 429
Query: 365 SARML 379
A L
Sbjct: 430 GAGRL 434
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 395 VRGLENVD-NSRGSVILLNHQSALDLYVLAVL 487
V G+EN+ NS ++ + NHQS LD+Y L L
Sbjct: 1170 VEGMENLPPNSSPAIYVANHQSFLDIYTLLTL 1201
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 26.6 bits (56), Expect(2) = 2.6
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 203 LIILFTISSIARYYIKFTIFTILCLLFAT 289
+IIL ++++ ++++I +TI T L FAT
Sbjct: 281 VIILSSVATASQFFISYTIRTFGALTFAT 309
Score = 21.0 bits (42), Expect(2) = 2.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 131 FKGIFIDITNMSGFNVVLGCVMAL 202
FKG ++I N + + CV++L
Sbjct: 232 FKGYDMEIHNQIFYTTMCSCVLSL 255
>03_01_0398 + 3092577-3093857
Length = 426
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 284 ATAPMPLMLLRPFSPKNALTPAALLRLSAR 373
AT P L+L RP +PK A A+ LRL R
Sbjct: 8 ATTPNSLLLRRPAAPKPASAAASPLRLPTR 37
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Frame = +2
Query: 140 IFIDITNMSGFNVVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATAPMPLMLLRP 319
+ +D+ N+ ++G V+++L+ L S + +++ ++++ +L +PL +L P
Sbjct: 1244 VMMDLHNLELTKDLVGLVISILL-LADFSLVLLTFLQLYSYSMIDVLLVLFVLPLGILAP 1302
Query: 320 F-SPKNALTPAALLRLS--ARMLGIRWKVRGLENV 415
F + NAL R + AR+ + W + L NV
Sbjct: 1303 FPAGINALFSHGPRRSAGLARVYAL-WNITSLVNV 1336
>06_02_0079 -
11512747-11512770,11513281-11513321,11513409-11513505,
11513555-11513965,11514493-11514665,11514829-11516008
Length = 641
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 441 NITDPRELSTFSNPRTFHRMPS 376
N+ +P LST + P FH +PS
Sbjct: 37 NVAEPPRLSTLTVPAKFHALPS 58
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 344 PAALLRLSARMLGIRWKVRGLENVDNSRGSVILLNHQSALDLYVLAVL 487
PAAL R +AR + + R + V S G+++ L HQ +L L+VL
Sbjct: 103 PAALRREAARTVCYEAQARIADPVYGSVGTILALQHQVSLLQGQLSVL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,998,790
Number of Sequences: 37544
Number of extensions: 299439
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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