Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J10
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021) 66 3e-11
SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45) 66 3e-11
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36) 29 2.8
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42592| Best HMM Match : DUF1640 (HMM E-Value=1.7) 28 6.4
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.4
SB_10190| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_47628| Best HMM Match : HEAT (HMM E-Value=1.3e-24) 28 6.4
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08) 28 6.4
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2) 27 8.5
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25) 27 8.5
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021)
Length = 127
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 308 LLRPFSPKNALTPAALLR-LSARMLGIRWKVRGLENVDNSRGSVILLNHQSALDLYVLAV 484
LLRP + N + LL +S++ +R + +GLEN+ ++ +I+ NHQS+LD++ +
Sbjct: 13 LLRPGNVNNFYRTSRLLYWISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILR 72
Query: 485 LWPIMARCTVVAKRSLQYLVPFGTATWLWGTVFI 586
+ P T +AKR L + FG A WL GTVFI
Sbjct: 73 ICP--PYTTFIAKRELLFAPFFGVAAWLTGTVFI 104
>SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45)
Length = 218
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 308 LLRPFSPKNALTPAALLR-LSARMLGIRWKVRGLENVDNSRGSVILLNHQSALDLYVLAV 484
LLRP + N + LL +S++ +R + +GLEN+ ++ +I+ NHQS+LD++ +
Sbjct: 13 LLRPGNVNNFYRTSRLLYWISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILR 72
Query: 485 LWPIMARCTVVAKRSLQYLVPFGTATWLWGTVFI 586
+ P T +AKR L + FG A WL GTVFI
Sbjct: 73 ICP--PYTTFIAKRELLFAPFFGVAAWLTGTVFI 104
>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
Length = 574
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -2
Query: 570 HSHVAVPKGTKY--CSERFATTVHRAIIGQSTAKT*RSSALW*FSNITDPRELSTFSNPR 397
H + G Y +ER+ A A LW F +++PR + NP+
Sbjct: 464 HGRITHQSGEVYDPSTERWTFIAPMATARVHCATAVHDGKLWVFGGLSEPRGSAICCNPK 523
Query: 396 TF-HRMPSILADRRSKAAGVSAF 331
F + P A++R ++ ++ F
Sbjct: 524 LFGMQRPYASAEKRKTSSSIARF 546
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 567 SHVAVPKGTKYCSERFATTVHRAIIGQSTAKT*RSSALW*FSNITDPRELSTFSNPRTFH 388
S + P+ T +R + +K+ +S+++ S+ + P LST S+P T H
Sbjct: 122 SDIHTPESTSGVQQRPLLLKKSSSSSSGVSKSSVNSSMYQASSSSSPTSLSTLSSPETRH 181
Query: 387 -RMPSILADRRSKAAGVSA 334
+P + + S A+ S+
Sbjct: 182 YHLPHLQRKQLSDASSSSS 200
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Frame = +3
Query: 345 QRPCYVCRQ---ECLAYDGRCADWRTW 416
Q+ C C Q EC D RC W W
Sbjct: 591 QKSCNTCEQDKLECFDRDPRCRSWARW 617
>SB_42592| Best HMM Match : DUF1640 (HMM E-Value=1.7)
Length = 420
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 551 QKAPNTAANVSPRPYIAP*SAKVRLRRKDPVHSGDLVILRIPE 423
+K N +V PR + KVRL RK+ V DLV R+ E
Sbjct: 122 KKKLNVRGSVKPRFDFCTSACKVRLLRKEVVEIKDLVEERVEE 164
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 DYGAMYGRGETFAAVFGAFWNS-YMAVGYCFH 585
D+G +G G++F FG F NS + G+ FH
Sbjct: 147 DFGGGFGHGDSFFGNFGNFRNSGFHEDGHDFH 178
>SB_10190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.9 bits (59), Expect = 6.4
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +2
Query: 158 NMSGFNVVLGCVMALLIILF-TISSIARYYIKFTI-FTILCLLFATAPMPLMLLRPFSPK 331
N + + GC ++L F T+ S+ R +++F + FTI +L+ +PL PF+ K
Sbjct: 125 NFAVWCATAGCGVSLTDPTFATLPSVIRGFLRFHVYFTIRRILYELG-VPLPGDNPFAQK 183
Query: 332 -NALTPAALLRLSA-----RMLGIRWK 394
N AA RL A R RWK
Sbjct: 184 GNPYKKAAFERLCAEFGLPRKPDFRWK 210
>SB_47628| Best HMM Match : HEAT (HMM E-Value=1.3e-24)
Length = 921
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 492 RLWRDVRSWRNVRCSIWCLLEQLHGCGVLFS 584
+++ D W+++ S+ CL + GCG F+
Sbjct: 192 QIFHDTAGWKHLETSMRCLQSVIEGCGEEFN 222
>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
Length = 386
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 460 TGSLRLSRTLADYGAMYGRGETFAAVFGAFWNSYMAV 570
TGS+R+SRTL+D M G + F+ + W +Y V
Sbjct: 197 TGSMRMSRTLSDGSDMAGLFD-FSRTGWSVWFTYFIV 232
>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 242 YIKFTIFTILCLLFATAPMPLMLLRPFSP 328
++ FT+ IL LLF +P+MLL F+P
Sbjct: 1016 HLPFTVVAILMLLFFVLSLPIMLL--FTP 1042
>SB_53187| Best HMM Match : POPLD (HMM E-Value=4.2)
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 185 GCVMALLIILF-TISSIARYYIKFTI-FTILCLLFATAPMPLMLLRPFSPK-NALTPAAL 355
GC ++L F T+ S+ R +++F + FTI +L+ +PL PF+ K N AA
Sbjct: 141 GCGVSLTDPTFATLPSVIRGFLRFHVYFTIRRILYELG-VPLPGDNPFAQKGNPYKKAAF 199
Query: 356 LRLSA-----RMLGIRWK 394
RL A R RWK
Sbjct: 200 ERLCAEFGLPRKPDFRWK 217
>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
Length = 440
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 196 GAADHFVHDQLYR*ILYKVYNIHYFVFVICYRSNAI 303
G ++ F HD L + YK+ N VFVI Y S+ I
Sbjct: 104 GGSNAFTHDSLT--LKYKLDNEFELVFVIIYNSSGI 137
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 250 LYIVSSDRADREQNDQQRHDTTQNYVET 167
L+ VSS D +Q Q DT Q+ VET
Sbjct: 6351 LFAVSSSSPDADQTFQHMQDTLQSVVET 6378
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,250
Number of Sequences: 59808
Number of extensions: 357335
Number of successful extensions: 985
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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