Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J10
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase f...    31   0.75 
At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase f...    29   1.7  
At1g01610.1 68414.m00078 phospholipid/glycerol acyltransferase f...    29   1.7  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   5.3  
At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels ...    27   7.0  
At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to...    27   7.0  
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    27   9.2  

>At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase
           family protein 
          Length = 500

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 332 NALTPAALLRLSARMLGIRWKVRGLENVDNSRGSV---ILLNHQSALDLYVLAV 484
           N   P   +R +  MLGI   +RG      S G++    +LNH++ALD  ++A+
Sbjct: 268 NLPLPERFVRYTYEMLGIHLTIRGHRPPPPSPGTLGNLYVLNHRTALDPIIVAI 321


>At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase
           family protein
          Length = 356

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 395 VRGLENVDNS-RGSVILLNHQSALDLYVLAVL 487
           + GLEN+ +S   +V + NHQS LD+Y L  L
Sbjct: 183 IEGLENLPSSDTPAVYVSNHQSFLDIYTLLSL 214


>At1g01610.1 68414.m00078 phospholipid/glycerol acyltransferase
           family protein similar to unknown protein GI:3335359
           from [Arabidopsis thaliana]
          Length = 503

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 332 NALTPAALLRLSARMLGIRWKVRGLENVDNSRG---SVILLNHQSALDLYVLAV 484
           N   P   +R +  +LGI   +RG      S G   ++ +LNH++ALD  ++A+
Sbjct: 269 NLPLPERFVRYTYEILGIHLTIRGHRPPPPSPGKPGNLYVLNHRTALDPIIIAI 322


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 161  MSGFNVVLGCVMALLIILFTISSIARYYIKF 253
            +SGF V +GC   L I +F + S+ +  +KF
Sbjct: 1137 LSGFFVTIGCSENLSIAIFAMDSLRQLSMKF 1167


>At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels
           between the genome sequence and the cDNA prevent
           identical translations from being annotated; the basis
           for this is under investigation.
          Length = 87

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 257 IFTILCLLFATAPMPLMLLRPF-SPKNALTPAA 352
           +F   CL  A AP P+  L P  SP   +TP A
Sbjct: 14  LFAASCLAQAPAPAPITFLPPVESPSPVVTPTA 46


>At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 369

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 375 CLAYDGRCADWRTWIILGDP 434
           CL   G C  W +WI+L  P
Sbjct: 186 CLCLMGHCLCWSSWIVLQSP 205


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 464 PVHSGDLVILRIPENYPRSPIRAPSIVCQAFLPTDV 357
           P+HS        PEN  R P   PSI CQ    T+V
Sbjct: 6   PLHSSSPSQFLSPENRQRLPRNYPSISCQNNSATNV 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,580
Number of Sequences: 28952
Number of extensions: 241152
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)