Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J09
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0813 - 31951168-31951722                                         30   0.85 
08_01_0601 - 5268520-5271112,5272448-5272950                           27   6.0  

>02_05_0813 - 31951168-31951722
          Length = 184

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 442 SGCCNRSLSASSWAGSLH---SASPWAGSFH 359
           S CC+ S  ASS A S     S+SPWA  FH
Sbjct: 65  SSCCSSSSEASSDASSSAASGSSSPWAARFH 95


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 227  VQHTSRLVSHCSELNLIPIKLAP 159
            ++H S  V HC +LN  P+K+AP
Sbjct: 968  LRHVS--VFHCGKLNTFPVKMAP 988


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,280
Number of Sequences: 37544
Number of extensions: 107143
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)