Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J09
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro...    31   0.30 
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro...    29   1.2  
At5g39690.1 68418.m04806 no apical meristem (NAM) protein-relate...    29   2.1  

>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
           protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
           contains Zinc finger C-x8-C-x5-C-x3-H type domain
           (PF00642); identical to zfwd3 protein (GP:12057168)
           {Arabidopsis thaliana}
          Length = 472

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 448 CHSGCCNRSLSASSWAGSLHSASPW 374
           C+SG C RS++  + AGSL S  PW
Sbjct: 216 CNSGQCVRSINLQAEAGSLISEGPW 240


>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
           protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
           contains Zinc finger C-x8-C-x5-C-x3-H type domain
           (PF00642); identical to zfwd4 protein (GI:12057170)
           [Arabidopsis thaliana]
          Length = 419

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 448 CHSGCCNRSLSASSWAGSLHSASPW 374
           C+SG C  S++  + AGSL S  PW
Sbjct: 160 CNSGQCVHSINLDAEAGSLISEGPW 184


>At5g39690.1 68418.m04806 no apical meristem (NAM) protein-related
           contains Pfam PF02365 : No apical meristem (NAM)
           protein;  similar to NAC domain protein NAC2
           (GI:21554255) {Arabidopsis thaliana}
          Length = 294

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 354 AEWNEPAHGEAECNEPAHDEAERLRLQQPE 443
           AE+++P      C    HD AE+L L QPE
Sbjct: 176 AEYHQPLAPLDSCQPQPHDLAEQLDLHQPE 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,305,078
Number of Sequences: 28952
Number of extensions: 85990
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)