Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J08
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.34 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   7.4  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 243  EGRGSLVDAVCTKPVVGLGETYAQQW 166
            EG G+    +C +PV+GLG  Y + +
Sbjct: 1052 EGLGNTTTIICCEPVIGLGHNYQKTY 1077


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 126 HSIPSIHPFNRMTSTAGHRSLPNQRPVLYK 215
           H IPS     R +ST    ++P Q+P L +
Sbjct: 28  HEIPSYQSLARRSSTWKRANIPQQKPSLVR 57


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 208 CTNRIHQTPATFIRSSIHLISRYVNVFVLF 297
           C N+ + +P+TF   S +LI + +N    F
Sbjct: 30  CDNKFYSSPSTFALLSSYLIEKRLNFLHAF 59


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 308 KIYSNKTKTFTYLDIRWIDDLMKVAGVW 225
           K+YS + +  TY+ +  I  L  +AG W
Sbjct: 47  KLYSEEVRYLTYIAVGTIHALFWLAGEW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,756
Number of Sequences: 5004
Number of extensions: 51288
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)