Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J08
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0564 - 5009170-5009446,5009719-5009806,5009992-5010130 31 0.61
05_03_0334 - 12550621-12550722,12552038-12552226 30 1.1
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 29 2.5
01_01_0144 - 1316626-1316658,1317580-1318863 29 2.5
07_01_0713 - 5438005-5438294,5438441-5438567,5438638-5438687,543... 29 3.3
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 4.3
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475... 28 4.3
11_06_0138 + 20522197-20522670 28 5.7
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334... 27 7.5
01_05_0081 - 17965802-17965849,17966257-17966328,17967581-17967793 27 7.5
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 27 10.0
02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952 27 10.0
>08_01_0564 - 5009170-5009446,5009719-5009806,5009992-5010130
Length = 167
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 161 DVHCWA*VSPKPTTGFVQTASTRLPRPSSGHR 256
DVH W V P+P FV T P P+S HR
Sbjct: 21 DVHTWVNVRPEPNP-FVGVTGTEPPSPTSIHR 51
>05_03_0334 - 12550621-12550722,12552038-12552226
Length = 96
Score = 30.3 bits (65), Expect = 1.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 79 WCNYWWPPRRYEP 117
WC WWP RR +P
Sbjct: 5 WCRIWWPQRRLQP 17
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 151 NGWMDGILWVPLARISLVATSNYTTL 74
NG++ G W P RI L++ SN TTL
Sbjct: 271 NGYVSGANWDPEGRIVLLSFSNSTTL 296
>01_01_0144 - 1316626-1316658,1317580-1318863
Length = 438
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 180 RSLPNQRPVLYKPHPPDSRDLHQVIDPP 263
R P+ +PV + PP + LH ++ PP
Sbjct: 61 RMAPSVKPVAFLADPPQASSLHMLLPPP 88
>07_01_0713 -
5438005-5438294,5438441-5438567,5438638-5438687,
5439119-5439426,5439581-5439673,5439840-5440197,
5440235-5440267,5440324-5440482,5440734-5440908
Length = 530
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 144 HPFNRMTSTAGHRSLPNQRPVLYKPHPPDSRDLHQVIDPP 263
HP + AG + LP VL +PH P+ L D P
Sbjct: 458 HPQLPAAAAAGPQDLPEAGDVLPQPHQPEPHHLQDAPDLP 497
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 79 WCNYWWPPRRYEPTGPTVFH 138
W NYW PP + P G + H
Sbjct: 274 WFNYWHPPPDHPPDGNEMLH 293
>03_06_0372 +
33446153-33446665,33446744-33446993,33447347-33447501,
33447593-33447805,33447926-33448113,33448282-33448540
Length = 525
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 188 ERPMPSSGRHSVEWMDGWNTVGPV 117
E+ P++G +W+D W V PV
Sbjct: 67 EKETPAAGEERFDWLDQWYPVAPV 90
>11_06_0138 + 20522197-20522670
Length = 157
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 150 MDGWMEYCGSRWLVSPWWPPVITP 79
+DG+ Y +RWL P WPP P
Sbjct: 38 LDGY--YVTARWLAPPRWPPTPPP 59
>11_06_0606 +
25432471-25432517,25433098-25433173,25433272-25433448,
25433576-25433653,25433749-25433853,25434042-25434108,
25434219-25434280,25434371-25434510,25434717-25434843,
25434917-25435031,25435220-25435308,25435699-25435782,
25435961-25436737
Length = 647
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 180 RSLPNQRPVLYKPHPPDSRDL 242
RS P+ P+LY+ PP S++L
Sbjct: 405 RSAPDVEPLLYEDSPPSSKEL 425
>01_05_0081 - 17965802-17965849,17966257-17966328,17967581-17967793
Length = 110
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 243 EGRGSLVDAVCTKPVVGLGETYAQQWTSFG*MDGWM 136
E G LV+A+C+ P+V + + W + WM
Sbjct: 37 EPGGQLVEALCSVPLVAMQAALQEDWICPSVLRAWM 72
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 108 IRANGTHSIPSIHPFN-RMTSTAGHRSLPNQRPVLYKPHPPDSRDLHQVIDPPYIE 272
I TH +P ++P R + R V +P PP S DL V+ PP E
Sbjct: 179 IDLTATHPVPYLNPRPIRAVPPPEAMEMLESRRVRARPPPPSS-DLRMVVAPPDAE 233
>02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952
Length = 206
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 138 SIHPFNRMTSTAGHRSLPNQRPVLYKPHPPDSRDLH 245
S+ P +S++G RSLP +P PP R H
Sbjct: 5 SLLPLPATSSSSGRRSLPPPTTTFPRPPPPLRRHRH 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,838
Number of Sequences: 37544
Number of extensions: 328848
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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