Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J08
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    27   6.8  

>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 123 THSI-PSIHPFNRMTSTAGHRSLPNQRPVLYKPHPPDSRDLHQVIDPPYIEVRKCFCFIR 299
           THS+ P  H F  +       ++ N    + +PHP  +   H+    P  +V + F   R
Sbjct: 170 THSLYPPTHSFRPLRREKSGDTVNNLNTCMLQPHPSPTAKRHENPRSPVFKVPRKFVSKR 229

Query: 300 VNLNSL 317
            N+ +L
Sbjct: 230 ENIQAL 235


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 476 IRKCLSYILDFSTTKIIMSIEYY*FFFLNFACHK*YYY 363
           I K  SYIL F+   +IM+I  Y F   N   ++ YY+
Sbjct: 146 IIKFTSYILHFAICDVIMNIVSYIFLIWNQKLNRKYYH 183


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 HPFNRMTSTAGHRSLPNQRPVLYKPHPP 227
           +P  +  ST+   S PN R  LY P PP
Sbjct: 174 YPPQQPPSTSAPHSSPNNRTSLYNPQPP 201


>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 430 IFVVLKSSI*LKHFRITYFSTYKFSIF 510
           ++V LKSSI   +F I Y+  Y FSIF
Sbjct: 303 VYVDLKSSIYSCYFSIIYYFYYFFSIF 329


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 302 YSNKTKTFTYLDIRWIDDLMKVAGVWWMRFVQNRSLV 192
           Y  +T TFT+LD    DD+      W+  F+ N SLV
Sbjct: 148 YDTRTFTFTFLDSPKCDDI-----TWYSDFIFNISLV 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,445
Number of Sequences: 27780
Number of extensions: 286523
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)