Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J08
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39360.1 68418.m04768 circadian clock coupling factor-related...    29   1.6  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    29   1.6  
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    28   3.6  
At5g38840.1 68418.m04698 forkhead-associated domain-containing p...    28   4.8  
At3g11640.1 68416.m01427 expressed protein                             27   6.3  
At1g66045.1 68414.m07496 hypothetical protein                          27   6.3  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    27   6.3  
At2g03040.1 68415.m00257 transmembrane protein-related low simil...    27   8.3  
At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR cla...    27   8.3  

>At5g39360.1 68418.m04768 circadian clock coupling factor-related
           similar to circadian clock coupling factor ZGT
           [Nicotiana tabacum] GI:14210079
          Length = 249

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 263 RWIDDLMKVAGVWWMRFVQNRSLVWERPMPSSGRHSVEWMDGWNTVG 123
           +W DDL K   + W  F + R+      + SSG HSV+    W  +G
Sbjct: 49  KWFDDLAK--RLLWKEFCRARAPKMMSDLQSSGSHSVD--GSWRALG 91


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 156 RMTSTAGHR--SLPNQRPVLYKPHPPDSRDLHQVIDPPYIEV 275
           ++T +  H   S P Q+P+ + P P  S  LH++  PP + V
Sbjct: 96  KLTGSPAHERISAPPQQPI-HHPKPQQSSRLHRIRPPPLVHV 136


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
           protein (PAKRP1)
          Length = 1292

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 147 PFNRMTSTAGHRSLPNQRPVLYKPHPPDSRDL 242
           P +R TST  HRS+  + P+   P PP S  L
Sbjct: 44  PLDRNTSTPDHRSMRMKNPL--PPRPPPSNPL 73


>At5g38840.1 68418.m04698 forkhead-associated domain-containing
           protein / FHA domain-containing protein related to
           adaptor protein kanadaptin [Homo sapiens]
           gi|13562130|gb|AAK29177
          Length = 735

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 117 NGTHSIPSIHPFNRMTSTAGHRSLPNQRPVLYKPHPPDSRDLHQVIDPPYIEVRK 281
           N +H I    P +   S +   S  N  P    P+PPD +    V++P  IE  K
Sbjct: 13  NPSHDIEPPEPNSTSISQSDETSTMNPPPPR-NPNPPDLKTTEVVVEPEPIEESK 66


>At3g11640.1 68416.m01427 expressed protein
          Length = 186

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 189 PNQRPVLYKPHPPDSRDLHQVIDPPYIEVRKCFCF 293
           P   P  + P P   RD+  VID   +  R C CF
Sbjct: 145 PCNSPPYFTPSPSPGRDMDDVIDVYEVSSRNC-CF 178


>At1g66045.1 68414.m07496 hypothetical protein
          Length = 144

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 311 IKIYSNKTKTFTYLDIRWIDDLMKVAGVWWMRFVQNRSLV 192
           +++ S+ +  + Y+D  WID+  K    W +  V  R L+
Sbjct: 26  LEVPSSNSTLYCYVDASWIDENSKAGISWILTEVHGRCLL 65


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +3

Query: 159 MTSTAGHRSL-----PNQRPVLYKPHPPDSRDLHQVIDPPY 266
           M+   GH S+     P  +PV+  P PP S+  H  +  PY
Sbjct: 588 MSGPHGHPSMMMSRPPQMQPVMRVPPPPGSQFSHMQVPQPY 628


>At2g03040.1 68415.m00257 transmembrane protein-related low
           similarity to SP|Q28735|TM21_RABIT Transmembrane protein
           Tmp21 precursor (21 kDa Transmembrane trafficking
           protein) (Integral membrane protein p23) {Oryctolagus
           cuniculus}
          Length = 166

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 30  ILIIINNISLQKRTLSVV*LLVA--TKEIRANGTHSIPSIHPFNRMTSTAGHRSLPNQRP 203
           IL++I  + L  RTLS+   L +  TK I      +  SI  +  +     H  LP+   
Sbjct: 8   ILLLIIAL-LSPRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHK 66

Query: 204 VLYKPHPPDSRDLHQ 248
           ++ K  PP  ++LH+
Sbjct: 67  IIVKVMPPQGKNLHE 81


>At1g57650.1 68414.m06542 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 525 TIR*LKNTEF-IRRKICYPKMFKLYTGLQ 442
           ++R + N EF +  ++CY K+ KL+ G+Q
Sbjct: 329 SLRFINNLEFLVELRMCYSKLEKLWDGIQ 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,048,836
Number of Sequences: 28952
Number of extensions: 263709
Number of successful extensions: 635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)