Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J07
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        210   4e-55
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_20321| Best HMM Match : DUF1653 (HMM E-Value=1.4)                   28   4.2  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   5.5  
SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   9.6  
SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)                        27   9.6  
SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               27   9.6  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  210 bits (514), Expect = 4e-55
 Identities = 97/116 (83%), Positives = 109/116 (93%)
 Frame = +1

Query: 112 WLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 291
           W KLT+DDVKEQ++KL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79

Query: 292 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 459
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135


>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -2

Query: 237 NKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIISG*FQPGRDTAAVRQRRLGYTLAR 58
           +K ++  T  + E+  D G  K  F  F DL          P  D  + +   LGY    
Sbjct: 620 DKFNVSGTQTLGENIADGGGLKLAFMAFRDLEKEKGPEEILPLLDMPSEKLFFLGYAQKE 679

Query: 57  CVHTT 43
           CVHTT
Sbjct: 680 CVHTT 684


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 321
           V L D HG + +   + + + RI++AM      PED   L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 18  DIIKSRQYGSYA-RTWQGY--IPVGAAVPPQCP 107
           D++ S+QYGSY   ++QGY   P    +PP  P
Sbjct: 123 DLMGSQQYGSYTDSSYQGYSTYPSQGRIPPASP 155


>SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 105 DTAAVRQRRLGYTLARCVHTTHIGGFLLY 19
           DT  ++  RLG  L RCV T  I G +++
Sbjct: 48  DTVGLKHARLGKVLWRCVRTRLIMGMIMF 76


>SB_20321| Best HMM Match : DUF1653 (HMM E-Value=1.4)
          Length = 103

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 105 DTAAVRQRRLGYTLARCVHTTHIGGFLLY 19
           DT  ++  RLG  L RCV T  I G +++
Sbjct: 64  DTVGLKHARLGKVLWRCVRTRLIMGMIMF 92


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 70  ISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 243
           +S   LP +RS+  + +L +D    ++    K       + V+  + D  G A    + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804

Query: 244 KKILRIMKAMGLAPD 288
           KKIL+ + AMG  P+
Sbjct: 805 KKILQRLVAMGKKPE 819


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 154 KLGKKGLTPSQIGVMLRD 207
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -2

Query: 372 AVLVLPITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSD 226
           +VL+  IT+    +  S    ++ I   +R++ ++F+DT+D+FT   +D
Sbjct: 36  SVLLREITYPSMENKSSWSQNMLNI---LRTRLNNFYDTEDVFTIVMND 81


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 283 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 426
           PD+P+D YYL +  +++M   L     KD   K   +L++     L  Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195


>SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)
          Length = 412

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 257 VS*KLWVLLLIYRKICTT*SRRLSP*GNIWNVIG--RTRTANSG*FLLNQGFTG*LVITR 430
           VS +LW LL +  ++CT  SR L+  G  W  +    T +     ++L +G    +V+TR
Sbjct: 85  VSCRLWYLLEVSCRLCTY-SRDLAGYGTYWRYLAGYGTYSRYLAGYVLTRGILQAMVLTR 143


>SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 64  KGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD-SHGVAQVRFVT 240
           +G S S    R S+PTWL+L    +  +  +         Q  V L+D +H  A +++  
Sbjct: 54  RGSSTSNAAPRTSLPTWLQLPGPVLLRRFVRANNNDPLVDQ--VELKDANHTYAHIQYAD 111

Query: 241 GKKILRIMKAMGLAPDLPED 300
           G++    +    LAP  P++
Sbjct: 112 GRE--STVSLRDLAPCPPQN 129


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 265 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 435
           +A G+APD P +L  LIK+ + + +     +  R+ K+   +    + R+  + R  +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,557
Number of Sequences: 59808
Number of extensions: 364603
Number of successful extensions: 870
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)