Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J07
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   244   4e-65
U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant respons...    27   8.5  
AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related ...    27   8.5  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  244 bits (596), Expect = 4e-65
 Identities = 110/151 (72%), Positives = 135/151 (89%)
 Frame = +1

Query: 40  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 219
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 220 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 399
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 400 RIHRLARYYKTKSVLPPNWKYESSTASALVA 492
           RIHRLARYYKTK  LPP WKYES TA++LV+
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151


>U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant response
           abnormal protein2, isoform b protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 381 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 214
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 213 MRV 205
           +R+
Sbjct: 82  LRI 84


>AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related
           protein ODR-2 isoform16 protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 381 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 214
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 213 MRV 205
           +R+
Sbjct: 82  LRI 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,354
Number of Sequences: 27780
Number of extensions: 263598
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)